BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00811
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.16952.C1 nseq=9 595 e-170
PTA.sd.984.C1 nseq=3 40 0.009
PTA.sd.16955.C1 nseq=8 38 0.036
PTA.sd.9628.C1 nseq=10 34 0.56
PTA.sd.13276.C1 nseq=6 34 0.56
At1g79490.F 34 0.56
PTA.sd.9422.C1 nseq=7 32 2.2
PTA.sd.9413.C1 nseq=4 32 2.2
PTA.sd.7604.C1 nseq=8 32 2.2
PTA.sd.5857.C1 nseq=16 32 2.2
PTA.sd.5120.C1 nseq=7 32 2.2
PTA.sd.4120.C1 nseq=19 32 2.2
PTA.sd.3816.C1 nseq=4 32 2.2
PTA.sd.2148.C1 nseq=3 32 2.2
PTA.sd.15601.C1 nseq=5 32 2.2
>PTA.sd.16952.C1 nseq=9
Length = 1329
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gagaagtgtgaggagacaacttgggaagagtcggtcagcttctgcggcgatcggaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gagaagtgtgaggagacaacttgggaagagtcggtcagcttctgcggcgatcggaggaat 792
Query: 61 gtctccggcgaacagaatcgatgagtctttacaagttcaacaagatgggattcaaagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtctccggcgaacagaatcgatgagtctttacaagttcaacaagatgggattcaaagtgc 852
Query: 121 gattcttcattgcaagaaatcgtttcatggctcgagagaatcttctctgttatcacgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gattcttcattgcaagaaatcgtttcatggctcgagagaatcttctctgttatcacgatc 912
Query: 181 tacgagtgaatcttcttcacaagagaaacttagtacttcgtcgtctgaagattcttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tacgagtgaatcttcttcacaagagaaacttagtacttcgtcgtctgaagattcttattt 972
Query: 241 gttttcaaggatttcaagtgattcaatttcggagaaatcaatggatagcttgacttcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gttttcaaggatttcaagtgattcaatttcggagaaatcaatggatagcttgacttcaat 1032
>PTA.sd.984.C1 nseq=3
Length = 704
Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 gaggaatgtctccggcgaac 73
||||||||||||||||||||
Sbjct: 88 gaggaatgtctccggcgaac 107
>PTA.sd.16955.C1 nseq=8
Length = 1297
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 123 ttcttcattgcaagaaatc 141
|||||||||||||||||||
Sbjct: 799 ttcttcattgcaagaaatc 817
>PTA.sd.9628.C1 nseq=10
Length = 1061
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 241 gttttcaaggatttcaa 257
|||||||||||||||||
Sbjct: 185 gttttcaaggatttcaa 201
>PTA.sd.13276.C1 nseq=6
Length = 863
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 39 cttctgcggcgatcggaggaa 59
||||||||||||| |||||||
Sbjct: 414 cttctgcggcgatgggaggaa 434
>At1g79490.F
Length = 2511
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 269 tcggagaaatcaatgga 285
|||||||||||||||||
Sbjct: 94 tcggagaaatcaatgga 78
>PTA.sd.9422.C1 nseq=7
Length = 1468
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 266 atttcggagaaatcaa 281
||||||||||||||||
Sbjct: 84 atttcggagaaatcaa 69
>PTA.sd.9413.C1 nseq=4
Length = 1124
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 gagaagtgtgaggaga 16
||||||||||||||||
Sbjct: 815 gagaagtgtgaggaga 830
>PTA.sd.7604.C1 nseq=8
Length = 1279
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 96 ttcaacaagatgggat 111
||||||||||||||||
Sbjct: 493 ttcaacaagatgggat 508
>PTA.sd.5857.C1 nseq=16
Length = 2645
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 aatcttcttcacaaga 204
||||||||||||||||
Sbjct: 167 aatcttcttcacaaga 152
>PTA.sd.5120.C1 nseq=7
Length = 2126
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 221 tcgtctgaagattctt 236
||||||||||||||||
Sbjct: 992 tcgtctgaagattctt 977
>PTA.sd.4120.C1 nseq=19
Length = 1476
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5 agtgtgaggagacaac 20
||||||||||||||||
Sbjct: 82 agtgtgaggagacaac 67
>PTA.sd.3816.C1 nseq=4
Length = 2012
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 193 ttcttcacaagagaaa 208
||||||||||||||||
Sbjct: 192 ttcttcacaagagaaa 177
>PTA.sd.2148.C1 nseq=3
Length = 1582
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 50 atcggaggaatgtctc 65
||||||||||||||||
Sbjct: 91 atcggaggaatgtctc 76
>PTA.sd.15601.C1 nseq=5
Length = 1791
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 123 ttcttcattgcaagaa 138
||||||||||||||||
Sbjct: 1217 ttcttcattgcaagaa 1232
>PTA.sd.14155.C1 nseq=8
Length = 1906
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 gtctccggcgaacaga 76
||||||||||||||||
Sbjct: 193 gtctccggcgaacaga 208
>PTA.sd.13454.C1 nseq=6
Length = 672
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 129 attgcaagaaatcgtt 144
||||||||||||||||
Sbjct: 11 attgcaagaaatcgtt 26
>PTA.sd.10113.C1 nseq=5
Length = 2040
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 184 gagtgaatcttcttca 199
||||||||||||||||
Sbjct: 789 gagtgaatcttcttca 804
>At5g42340.F
Length = 1971
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 ttttcaaggatttcaa 257
||||||||||||||||
Sbjct: 1406 ttttcaaggatttcaa 1391
>At4g31630.F
Length = 1539
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 125 cttcattgcaagaaat 140
||||||||||||||||
Sbjct: 1502 cttcattgcaagaaat 1517
>At1g43610.F
Length = 768
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 ttcacaagagaaactt 211
||||||||||||||||
Sbjct: 548 ttcacaagagaaactt 563
>At4g27630.F PTA.sd.12842.singlet
Length = 1896
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 273 agaaatcaatggata 287
|||||||||||||||
Sbjct: 465 agaaatcaatggata 451
>At4g21430.F PTA.sd.12336.singlet
Length = 2187
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 tcttcttcacaagag 205
|||||||||||||||
Sbjct: 1685 tcttcttcacaagag 1671
>PTA.sd.9867.C1 nseq=7
Length = 1187
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 tttcaaggatttcaa 257
|||||||||||||||
Sbjct: 138 tttcaaggatttcaa 152
>PTA.sd.9306.C1 nseq=2
Length = 5946
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 atcttctctgttatc 174
|||||||||||||||
Sbjct: 96 atcttctctgttatc 82
>PTA.sd.8637.C1 nseq=5
Length = 679
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 aagtgattcaatttc 270
|||||||||||||||
Sbjct: 523 aagtgattcaatttc 537
>PTA.sd.8414.C1 nseq=13
Length = 1254
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 ttcaaggatttcaag 258
|||||||||||||||
Sbjct: 700 ttcaaggatttcaag 714
>PTA.sd.776.C1 nseq=2
Length = 3927
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 tgaatcttcttcaca 201
|||||||||||||||
Sbjct: 1797 tgaatcttcttcaca 1783
>PTA.sd.7119.C1 nseq=9
Length = 1807
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 gaatcttcttcacaa 202
|||||||||||||||
Sbjct: 1598 gaatcttcttcacaa 1584
>PTA.sd.6838.C1 nseq=7
Length = 1932
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 187 tgaatcttcttcacaagag 205
||||| |||||||||||||
Sbjct: 506 tgaatgttcttcacaagag 524
>PTA.sd.6074.C1 nseq=4
Length = 1472
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 tatcacgatctacga 185
|||||||||||||||
Sbjct: 90 tatcacgatctacga 76
>PTA.sd.5822.C1 nseq=2
Length = 5200
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 ttcaagtgattcaat 267
|||||||||||||||
Sbjct: 3829 ttcaagtgattcaat 3815
>PTA.sd.5276.C1 nseq=2
Length = 3564
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 agaatcttctctgtt 171
|||||||||||||||
Sbjct: 2650 agaatcttctctgtt 2636
>PTA.sd.427.C1 nseq=2
Length = 1003
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 atcttctctgttatc 174
|||||||||||||||
Sbjct: 735 atcttctctgttatc 721
>PTA.sd.3443.C1 nseq=4
Length = 1476
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 98 caacaagatgggattcaaagtgc 120
||||||||| | |||||||||||
Sbjct: 1148 caacaagatagtattcaaagtgc 1170
>PTA.sd.3425.C1 nseq=8
Length = 3373
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 tgttttcaaggattt 254
|||||||||||||||
Sbjct: 1491 tgttttcaaggattt 1477
>PTA.sd.3392.C1 nseq=12
Length = 948
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 aatcttcttcacaag 203
|||||||||||||||
Sbjct: 374 aatcttcttcacaag 360
>PTA.sd.2977.C1 nseq=11
Length = 1096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gcttctgcggcgatc 52
|||||||||||||||
Sbjct: 22 gcttctgcggcgatc 36
>PTA.sd.2412.C2 nseq=8
Length = 2003
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 aagattcttatttgt 242
|||||||||||||||
Sbjct: 932 aagattcttatttgt 946
>PTA.sd.18037.C1 nseq=12
Length = 1429
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 tgaatcttcttcaca 201
|||||||||||||||
Sbjct: 120 tgaatcttcttcaca 106
>PTA.sd.17658.C1 nseq=4
Length = 1741
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 ggagaaatcaatgga 285
|||||||||||||||
Sbjct: 79 ggagaaatcaatgga 93
>PTA.sd.16583.C1 nseq=7
Length = 2589
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 agaatcttctctgtt 171
|||||||||||||||
Sbjct: 2313 agaatcttctctgtt 2299
>PTA.sd.16419.C1 nseq=5
Length = 4423
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 ttacaagttcaacaa 103
|||||||||||||||
Sbjct: 2679 ttacaagttcaacaa 2693
>PTA.sd.1618.C1 nseq=6
Length = 6295
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 259 tgattcaatttcggagaaa 277
|||||||||||| ||||||
Sbjct: 2025 tgattcaatttctgagaaa 2043
>PTA.sd.15473.C1 nseq=9
Length = 715
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 agtgaatcttcttca 199
|||||||||||||||
Sbjct: 148 agtgaatcttcttca 162
>PTA.sd.15429.C1 nseq=6
Length = 4755
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 tcttctctgttatca 175
|||||||||||||||
Sbjct: 1010 tcttctctgttatca 996
>PTA.sd.15347.C1 nseq=2
Length = 4108
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 acagaatcgatgagt 86
|||||||||||||||
Sbjct: 3017 acagaatcgatgagt 3031
>PTA.sd.1522.C1 nseq=7
Length = 2798
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 gattcttatttgttt 244
|||||||||||||||
Sbjct: 2746 gattcttatttgttt 2760
>PTA.sd.1513.C1 nseq=4
Length = 1618
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 agaaatcgtttcatg 149
|||||||||||||||
Sbjct: 1171 agaaatcgtttcatg 1157
>PTA.sd.14687.C1 nseq=8
Length = 1509
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 239 ttgttttcaaggatttcaa 257
||||||||||| |||||||
Sbjct: 522 ttgttttcaagtatttcaa 540
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)