BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00787
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17749.C1 nseq=10 595 e-170
PTA.sd.5677.C1 nseq=7 34 0.56
PTA.sd.14087.C1 nseq=8 34 0.56
PTA.sd.12830.C1 nseq=38 34 0.56
At1g54960.F 34 0.56
At1g36180.F 34 0.56
PTA.sd.9785.C1 nseq=2 32 2.2
PTA.sd.267.C1 nseq=4 32 2.2
PTA.sd.17115.C1 nseq=20 32 2.2
PTA.sd.10052.C1 nseq=5 32 2.2
At1g14800.F 32 2.2
At4g35270.F PTA.sd.13478.singlet 30 8.7
PTA.sd.9644.C1 nseq=15 30 8.7
PTA.sd.9108.C1 nseq=10 30 8.7
PTA.sd.7575.C1 nseq=23 30 8.7
>PTA.sd.17749.C1 nseq=10
Length = 1847
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tcacctccacaaggattgcctggatcagcaatacataacgaaagacttaaccgtccactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 tcacctccacaaggattgcctggatcagcaatacataacgaaagacttaaccgtccactt 1351
Query: 61 atccgtcctttaccatcagaggaggcatcacgcggtggtgatagccattcgcaatcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 atccgtcctttaccatcagaggaggcatcacgcggtggtgatagccattcgcaatcccca 1411
Query: 121 cctgttgtgattccaccaccacctgcgaagcacgttgagagggaaaaattcttcaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 cctgttgtgattccaccaccacctgcgaagcacgttgagagggaaaaattcttcaaggag 1471
Query: 181 aataaaggtgacggtgccttgggtttaccaggtcatatgcgaggcctttctttgcatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 aataaaggtgacggtgccttgggtttaccaggtcatatgcgaggcctttctttgcatagc 1531
Query: 241 cgtgatggcagcagctcacgcagtggaagcgtagacttcagtgactgaaacaaccaaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 cgtgatggcagcagctcacgcagtggaagcgtagacttcagtgactgaaacaaccaaagc 1591
>PTA.sd.5677.C1 nseq=7
Length = 2312
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 125 ttgtgattccaccacca 141
|||||||||||||||||
Sbjct: 2138 ttgtgattccaccacca 2122
>PTA.sd.14087.C1 nseq=8
Length = 2012
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 166 aaattcttcaaggagaa 182
|||||||||||||||||
Sbjct: 1145 aaattcttcaaggagaa 1161
>PTA.sd.12830.C1 nseq=38
Length = 2280
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 162 ggaaaaattcttcaaggagaa 182
||||||| |||||||||||||
Sbjct: 1791 ggaaaaagtcttcaaggagaa 1811
>At1g54960.F
Length = 1956
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 65 gtcctttaccatcagag 81
|||||||||||||||||
Sbjct: 1052 gtcctttaccatcagag 1068
>At1g36180.F
Length = 7080
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 230 ctttgcatagccgtgat 246
|||||||||||||||||
Sbjct: 1163 ctttgcatagccgtgat 1179
>PTA.sd.9785.C1 nseq=2
Length = 1414
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 88 tcacgcggtggtgata 103
||||||||||||||||
Sbjct: 1176 tcacgcggtggtgata 1161
>PTA.sd.267.C1 nseq=4
Length = 1655
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 166 aaattcttcaaggaga 181
||||||||||||||||
Sbjct: 252 aaattcttcaaggaga 237
>PTA.sd.17115.C1 nseq=20
Length = 1813
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 187 ggtgacggtgccttgggttt 206
||||| ||||||||||||||
Sbjct: 768 ggtgatggtgccttgggttt 749
>PTA.sd.10052.C1 nseq=5
Length = 1292
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 130 attccaccaccacctg 145
||||||||||||||||
Sbjct: 402 attccaccaccacctg 387
>At1g14800.F
Length = 1155
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 155 ttgagagggaaaaatt 170
||||||||||||||||
Sbjct: 380 ttgagagggaaaaatt 395
>At4g35270.F PTA.sd.13478.singlet
Length = 3096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 attcttcaaggagaa 182
|||||||||||||||
Sbjct: 397 attcttcaaggagaa 383
>PTA.sd.9644.C1 nseq=15
Length = 997
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 attccaccaccacct 144
|||||||||||||||
Sbjct: 364 attccaccaccacct 350
>PTA.sd.9108.C1 nseq=10
Length = 1972
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 58 cttatccgtcctttaccatcaga 80
||||||||||||| | |||||||
Sbjct: 1230 cttatccgtccttcagcatcaga 1208
>PTA.sd.7575.C1 nseq=23
Length = 1703
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 tccaccaccacctgc 146
|||||||||||||||
Sbjct: 516 tccaccaccacctgc 530
>PTA.sd.616.C1 nseq=38
Length = 1260
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 agaataaaggtgacg 193
|||||||||||||||
Sbjct: 376 agaataaaggtgacg 390
>PTA.sd.5480.C1 nseq=32
Length = 639
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 gttgagagggaaaaa 168
|||||||||||||||
Sbjct: 589 gttgagagggaaaaa 575
>PTA.sd.4157.C1 nseq=5
Length = 939
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 aattcttcaaggaga 181
|||||||||||||||
Sbjct: 425 aattcttcaaggaga 439
>PTA.sd.17.C1 nseq=2
Length = 3849
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tccaccaccacctgc 146
|||||||||||||||
Sbjct: 3057 tccaccaccacctgc 3043
>PTA.sd.16059.C1 nseq=3
Length = 2076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 ttccaccaccacctg 145
|||||||||||||||
Sbjct: 1788 ttccaccaccacctg 1774
>PTA.sd.15322.C1 nseq=3
Length = 2018
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 ccccacctgttgtga 130
|||||||||||||||
Sbjct: 747 ccccacctgttgtga 733
>PTA.sd.13844.C1 nseq=6
Length = 914
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tccaccaccacctgc 146
|||||||||||||||
Sbjct: 774 tccaccaccacctgc 760
>PTA.sd.11650.C1 nseq=3
Length = 1396
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 attccaccaccacct 144
|||||||||||||||
Sbjct: 1041 attccaccaccacct 1027
>At5g10420.F
Length = 1371
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 gttgagagggaaaaa 168
|||||||||||||||
Sbjct: 537 gttgagagggaaaaa 523
>At4g39790.F
Length = 1896
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 225 cctttctttgcatag 239
|||||||||||||||
Sbjct: 42 cctttctttgcatag 28
>At3g19070.F
Length = 1041
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 176 aggagaataaaggtgacgg 194
||||| |||||||||||||
Sbjct: 676 aggaggataaaggtgacgg 658
>At3g17830.F
Length = 1482
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 cgtcctttaccatca 78
|||||||||||||||
Sbjct: 710 cgtcctttaccatca 696
>At3g14320.F
Length = 615
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 92 gcggtggtgatagccattc 110
||||||||||||| |||||
Sbjct: 580 gcggtggtgatagacattc 598
>At2g27610.F
Length = 2607
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 gcctttctttgcata 238
|||||||||||||||
Sbjct: 1632 gcctttctttgcata 1618
>At2g18180.F
Length = 1677
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 gaaagacttaaccgt 54
|||||||||||||||
Sbjct: 768 gaaagacttaaccgt 754
>At2g04300.F
Length = 2556
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 cttcaaggagaataa 185
|||||||||||||||
Sbjct: 617 cttcaaggagaataa 631
>At1g61630.F
Length = 1254
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 260 gcagtggaagcgtag 274
|||||||||||||||
Sbjct: 317 gcagtggaagcgtag 331
>At1g19750.F
Length = 765
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 132 tccaccaccacctgcgaag 150
||||| |||||||||||||
Sbjct: 422 tccacaaccacctgcgaag 404
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)