BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00717
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.10143.C1 nseq=2 149 1e-35
PTA.sd.16649.C1 nseq=6 32 2.2
PTA.sd.13861.C1 nseq=8 32 2.2
PTA.sd.11504.C1 nseq=4 32 2.2
At4g35960.F 32 2.2
At4g34930.F 32 2.2
At4g18520.F PTA.sd.12160.singlet 30 8.7
At2g11640.F PTA.sd.5012.singlet 30 8.7
PTA.sd.9060.C1 nseq=4 30 8.7
PTA.sd.896.C1 nseq=3 30 8.7
PTA.sd.8536.C1 nseq=29 30 8.7
PTA.sd.8439.C1 nseq=11 30 8.7
PTA.sd.7140.C1 nseq=3 30 8.7
PTA.sd.6837.C1 nseq=12 30 8.7
PTA.sd.6657.C1 nseq=8 30 8.7
>PTA.sd.10143.C1 nseq=2
Length = 1648
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 gggcgtggctttgacccgaacacaaacgagctacaacctcaaccgtcgtccactgatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 gggcgtggctttgacccgaacacaaacgagctacaacctcaaccgtcgtccactgatttc 1633
Query: 61 attcgacgatgttga 75
|||||||||||||||
Sbjct: 1634 attcgacgatgttga 1648
>PTA.sd.16649.C1 nseq=6
Length = 1528
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 49 tccactgatttcattc 64
||||||||||||||||
Sbjct: 320 tccactgatttcattc 335
>PTA.sd.13861.C1 nseq=8
Length = 2200
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 146 attttgatttgatgat 161
||||||||||||||||
Sbjct: 2039 attttgatttgatgat 2054
>PTA.sd.11504.C1 nseq=4
Length = 1365
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 101 tgtgactctttcatga 116
||||||||||||||||
Sbjct: 886 tgtgactctttcatga 871
>At4g35960.F
Length = 273
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 tgaaaatagtatgatg 88
||||||||||||||||
Sbjct: 141 tgaaaatagtatgatg 156
>At4g34930.F
Length = 1176
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 gtccactgatttcatt 63
||||||||||||||||
Sbjct: 1080 gtccactgatttcatt 1095
>At4g18520.F PTA.sd.12160.singlet
Length = 1698
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 atgataaagacagat 127
|||||||||||||||
Sbjct: 883 atgataaagacagat 897
>At2g11640.F PTA.sd.5012.singlet
Length = 1476
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 124 agatcttcatattggtact 142
||||||| |||||||||||
Sbjct: 51 agatcttgatattggtact 69
>PTA.sd.9060.C1 nseq=4
Length = 1274
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 gatactatatgaaat 173
|||||||||||||||
Sbjct: 710 gatactatatgaaat 696
>PTA.sd.896.C1 nseq=3
Length = 1093
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 ttgtatatatgatat 204
|||||||||||||||
Sbjct: 1038 ttgtatatatgatat 1052
>PTA.sd.8536.C1 nseq=29
Length = 3337
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 gaaggtagcttcttc 297
|||||||||||||||
Sbjct: 1379 gaaggtagcttcttc 1365
>PTA.sd.8439.C1 nseq=11
Length = 1115
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 gcattttgatttgat 158
|||||||||||||||
Sbjct: 957 gcattttgatttgat 943
>PTA.sd.7140.C1 nseq=3
Length = 738
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 275 tcaagtacgaaggtagctt 293
|||| ||||||||||||||
Sbjct: 240 tcaaatacgaaggtagctt 258
>PTA.sd.6837.C1 nseq=12
Length = 2688
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 gctttgtatatatga 201
|||||||||||||||
Sbjct: 968 gctttgtatatatga 954
>PTA.sd.6657.C1 nseq=8
Length = 1035
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 attttgatttgatga 160
|||||||||||||||
Sbjct: 937 attttgatttgatga 951
>PTA.sd.6374.C1 nseq=14
Length = 5164
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 199 tgatattcttagggaagtg 217
||||||||||| |||||||
Sbjct: 4590 tgatattcttaaggaagtg 4608
>PTA.sd.4529.C1 nseq=18
Length = 1507
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 cgaattcgatttcaa 278
|||||||||||||||
Sbjct: 120 cgaattcgatttcaa 106
>PTA.sd.3827.C1 nseq=2
Length = 2411
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 cgacgatgttgaaaa 78
|||||||||||||||
Sbjct: 2311 cgacgatgttgaaaa 2325
>PTA.sd.1846.C1 nseq=3
Length = 1840
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 cagatcttcatattg 137
|||||||||||||||
Sbjct: 1591 cagatcttcatattg 1577
>PTA.sd.1667.C1 nseq=6
Length = 2588
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 aaagacagatcttca 132
|||||||||||||||
Sbjct: 2165 aaagacagatcttca 2151
>PTA.sd.16635.C1 nseq=9
Length = 1712
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 agtgctttgtatata 198
|||||||||||||||
Sbjct: 546 agtgctttgtatata 532
>PTA.sd.16014.C1 nseq=7
Length = 832
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 tttgacccgaacaca 24
|||||||||||||||
Sbjct: 605 tttgacccgaacaca 591
>PTA.sd.15874.C1 nseq=5
Length = 3899
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 140 actagcattttgatttgat 158
||||||| |||||||||||
Sbjct: 2381 actagcaatttgatttgat 2363
>PTA.sd.1393.C2 nseq=19
Length = 1511
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 caacctcaaccgtcg 48
|||||||||||||||
Sbjct: 553 caacctcaaccgtcg 567
>PTA.sd.13451.C1 nseq=24
Length = 1293
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 gtccactgatttcat 62
|||||||||||||||
Sbjct: 941 gtccactgatttcat 955
>PTA.sd.12822.C1 nseq=6
Length = 3418
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 tgactctttcatgat 117
|||||||||||||||
Sbjct: 1845 tgactctttcatgat 1859
>PTA.sd.11115.C1 nseq=15
Length = 2329
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 tgactctttcatgat 117
|||||||||||||||
Sbjct: 2249 tgactctttcatgat 2263
>PTA.sd.10518.C1 nseq=3
Length = 979
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 gatgcaaaaccgctc 264
|||||||||||||||
Sbjct: 567 gatgcaaaaccgctc 581
>At5g53630.F
Length = 1281
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 ctttgtatatatgat 202
|||||||||||||||
Sbjct: 946 ctttgtatatatgat 960
>At5g35550.F
Length = 777
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 ctcgaattcgatttc 276
|||||||||||||||
Sbjct: 559 ctcgaattcgatttc 573
>At3g45800.F
Length = 1692
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 124 agatcttcatattggtact 142
||||||| |||||||||||
Sbjct: 558 agatcttgatattggtact 576
>At3g19880.F
Length = 1170
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 tagcattttgatttg 156
|||||||||||||||
Sbjct: 974 tagcattttgatttg 960
>At1g51910.F
Length = 2640
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 gatcttcatattggt 139
|||||||||||||||
Sbjct: 370 gatcttcatattggt 384
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)