BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00693
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14689.C1 nseq=22 595 e-170
At5g19390.F PTA.sd.15219.singlet 80 1e-14
PTA.sd.9543.C1 nseq=2 34 0.56
PTA.sd.13119.C1 nseq=21 34 0.56
PTA.sd.5393.C1 nseq=11 32 2.2
PTA.sd.17720.C1 nseq=2 32 2.2
At2g28050.F 32 2.2
At4g14746.F PTA.sd.11859.singlet 30 8.7
At3g14860.F PTA.sd.8529.singlet 30 8.7
PTA.sd.9025.C1 nseq=6 30 8.7
PTA.sd.6289.C1 nseq=5 30 8.7
PTA.sd.6135.C1 nseq=11 30 8.7
PTA.sd.5979.C1 nseq=2 30 8.7
PTA.sd.5141.C1 nseq=3 30 8.7
PTA.sd.46.C1 nseq=4 30 8.7
>PTA.sd.14689.C1 nseq=22
Length = 2953
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aacctgcaagtaaaactactggctcatcaacagtaaattcgaagcgttcttcgtcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 aacctgcaagtaaaactactggctcatcaacagtaaattcgaagcgttcttcgtcctggg 1831
Query: 61 gaagaggcaacggcaagaaaacacctgctaaaggatcatttgattcctcaggaaatgacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gaagaggcaacggcaagaaaacacctgctaaaggatcatttgattcctcaggaaatgacg 1891
Query: 121 agcttcttatacagaggctcgagcacatgaaagatgaactgcgacaacgaatcgctaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 agcttcttatacagaggctcgagcacatgaaagatgaactgcgacaacgaatcgctaagg 1951
Query: 181 aggctaaaggaaatgcggctctacaagctagcttggagagaaggaagcaggctttgcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 aggctaaaggaaatgcggctctacaagctagcttggagagaaggaagcaggctttgcacg 2011
Query: 241 aacgacggttggcacttgaacaagatgtgggtagattacaagagcaactgcaagctgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 aacgacggttggcacttgaacaagatgtgggtagattacaagagcaactgcaagctgaga 2071
>At5g19390.F PTA.sd.15219.singlet
Length = 2694
Score = 79.8 bits (40), Expect = 1e-14
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 207 gctagcttggagagaaggaagcaggctttgcacgaacgacggttggcacttgaacaagat 266
|||||||||||||||||||| || || |||| ||||| || ||| | ||||||||||||
Sbjct: 1882 gctagcttggagagaaggaaacaagcactgcatgaacgtcgtttgtcgcttgaacaagat 1941
Query: 267 gtgggtagattacaagagcaactgcaagctga 298
||| |||||||||||||| |||||||||||
Sbjct: 1942 gtgtcaagattacaagagcagctgcaagctga 1973
Score = 79.8 bits (40), Expect = 1e-14
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 99 tttgattcctcaggaaatgacgagcttcttatacagaggctcgagcacatgaaagatgaa 158
|||||||| |||||| | ||||||||| |||||||||||||||| || ||| |||||
Sbjct: 1798 tttgattcttcaggagaagacgagcttgctatacagaggctcgagaccacaaaaaatgaa 1857
Query: 159 ctgcgacaacgaatcgctaaggaggcta 186
|||||||||||||| || ||||||||||
Sbjct: 1858 ctgcgacaacgaattgcaaaggaggcta 1885
>PTA.sd.9543.C1 nseq=2
Length = 1533
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 211 gcttggagagaaggaag 227
|||||||||||||||||
Sbjct: 559 gcttggagagaaggaag 575
>PTA.sd.13119.C1 nseq=21
Length = 1958
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 172 tcgctaaggaggctaaaggaa 192
||||||||| |||||||||||
Sbjct: 676 tcgctaaggtggctaaaggaa 696
>PTA.sd.5393.C1 nseq=11
Length = 1141
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 229 aggctttgcacgaacg 244
||||||||||||||||
Sbjct: 329 aggctttgcacgaacg 314
>PTA.sd.17720.C1 nseq=2
Length = 1543
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 aaggaggctaaaggaa 192
||||||||||||||||
Sbjct: 1053 aaggaggctaaaggaa 1068
>At2g28050.F
Length = 1389
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 268 tgggtagattacaagagcaa 287
|||| |||||||||||||||
Sbjct: 669 tggggagattacaagagcaa 688
>At4g14746.F PTA.sd.11859.singlet
Length = 753
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 tcctggggaagaggc 68
|||||||||||||||
Sbjct: 400 tcctggggaagaggc 386
>At3g14860.F PTA.sd.8529.singlet
Length = 1530
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 aggaaatgcggctct 202
|||||||||||||||
Sbjct: 693 aggaaatgcggctct 707
>PTA.sd.9025.C1 nseq=6
Length = 1973
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 gcaacggcaagaaaa 81
|||||||||||||||
Sbjct: 432 gcaacggcaagaaaa 418
>PTA.sd.6289.C1 nseq=5
Length = 3422
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 attcgaagcgttctt 51
|||||||||||||||
Sbjct: 2786 attcgaagcgttctt 2800
>PTA.sd.6135.C1 nseq=11
Length = 3237
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 tggggaagaggcaac 71
|||||||||||||||
Sbjct: 2659 tggggaagaggcaac 2673
>PTA.sd.5979.C1 nseq=2
Length = 2689
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 cttgaacaagatgtg 269
|||||||||||||||
Sbjct: 70 cttgaacaagatgtg 56
>PTA.sd.5141.C1 nseq=3
Length = 1430
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 tagcttggagagaag 223
|||||||||||||||
Sbjct: 1361 tagcttggagagaag 1375
>PTA.sd.46.C1 nseq=4
Length = 1413
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 ttgaacaagatgtgg 270
|||||||||||||||
Sbjct: 338 ttgaacaagatgtgg 352
>PTA.sd.4109.C1 nseq=6
Length = 1487
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 216 gagagaaggaagcaggctt 234
|||||||||||| ||||||
Sbjct: 239 gagagaaggaaggaggctt 221
>PTA.sd.2775.C1 nseq=6
Length = 1952
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 cttggagagaaggaa 226
|||||||||||||||
Sbjct: 1019 cttggagagaaggaa 1033
>PTA.sd.2473.C1 nseq=5
Length = 2950
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 tcgtcctggggaaga 65
|||||||||||||||
Sbjct: 1302 tcgtcctggggaaga 1316
>PTA.sd.17454.C1 nseq=8
Length = 1260
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 attcgaagcgttctt 51
|||||||||||||||
Sbjct: 65 attcgaagcgttctt 79
>PTA.sd.16941.C1 nseq=8
Length = 2441
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 gaaatgacgagcttc 126
|||||||||||||||
Sbjct: 1456 gaaatgacgagcttc 1470
>PTA.sd.16649.C1 nseq=6
Length = 1528
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 110 aggaaatgacgagcttctt 128
|||| ||||||||||||||
Sbjct: 1323 aggatatgacgagcttctt 1305
>PTA.sd.15148.C1 nseq=7
Length = 1808
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 gcacttgaacaagat 266
|||||||||||||||
Sbjct: 455 gcacttgaacaagat 469
>PTA.sd.13940.C1 nseq=14
Length = 3095
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 agcacatgaaagatg 156
|||||||||||||||
Sbjct: 710 agcacatgaaagatg 696
>PTA.sd.11373.C1 nseq=7
Length = 3073
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 gctctacaagctagc 212
|||||||||||||||
Sbjct: 2170 gctctacaagctagc 2184
>At5g41315.F
Length = 1914
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 gcttggagagaagga 225
|||||||||||||||
Sbjct: 1723 gcttggagagaagga 1737
>At5g10370.F
Length = 5256
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 ttgattcctcaggaa 114
|||||||||||||||
Sbjct: 367 ttgattcctcaggaa 353
>At5g03640.F
Length = 2781
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 cttggagagaaggaa 226
|||||||||||||||
Sbjct: 1728 cttggagagaaggaa 1742
>At3g45530.F
Length = 2079
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 aactgcgacaacgaa 171
|||||||||||||||
Sbjct: 1510 aactgcgacaacgaa 1524
>At3g28030.F
Length = 4440
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 aacggcaagaaaaca 83
|||||||||||||||
Sbjct: 3472 aacggcaagaaaaca 3486
>At2g47290.F
Length = 573
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 cagaggctcgagcac 146
|||||||||||||||
Sbjct: 89 cagaggctcgagcac 103
>At1g47560.F
Length = 4695
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 tcatttgattcctca 110
|||||||||||||||
Sbjct: 3914 tcatttgattcctca 3900
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)