BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00623
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.16050.C1 nseq=12 595 e-170
PTA.sd.10466.C1 nseq=3 36 0.14
At3g60730.F PTA.sd.10840.singlet 32 2.2
At1g29970.F PTA.sd.2093.singlet 32 2.2
PTA.sd.5712.C1 nseq=3 32 2.2
PTA.sd.17401.C1 nseq=7 32 2.2
PTA.sd.16976.C1 nseq=13 32 2.2
PTA.sd.16053.C1 nseq=4 32 2.2
At3g32280.F 32 2.2
At4g15180.F PTA.sd.11892.singlet 30 8.7
At3g55270.F PTA.sd.10443.singlet 30 8.7
PTA.sd.9861.C1 nseq=3 30 8.7
PTA.sd.8509.C1 nseq=10 30 8.7
PTA.sd.7894.C1 nseq=6 30 8.7
PTA.sd.7711.C1 nseq=8 30 8.7
>PTA.sd.16050.C1 nseq=12
Length = 1567
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ccgttgaagatgttagtccaactgttttcccagctggacctcttttccctactgagggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccgttgaagatgttagtccaactgttttcccagctggacctcttttccctactgagggga 416
Query: 61 gaattgtgcaactgtttgagaagaatacttattccgttgtcaacatctttgatgtgacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaattgtgcaactgtttgagaagaatacttattccgttgtcaacatctttgatgtgacat 476
Query: 121 tacggcctcagctcaaaatgacgggtgtggttgagataccagaaggaaatggctctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tacggcctcagctcaaaatgacgggtgtggttgagataccagaaggaaatggctctggag 536
Query: 181 tagtctgggacggacaaggatacatcgtgaccaattatcacgttattggcaatgcccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tagtctgggacggacaaggatacatcgtgaccaattatcacgttattggcaatgcccttt 596
Query: 241 caagaaatcctagccccggggatgtagttggtcgtgtgaatattctggcatctgatgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caagaaatcctagccccggggatgtagttggtcgtgtgaatattctggcatctgatgggg 656
>PTA.sd.10466.C1 nseq=3
Length = 1725
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 164 aggaaatggctctggagt 181
||||||||||||||||||
Sbjct: 402 aggaaatggctctggagt 385
>At3g60730.F PTA.sd.10840.singlet
Length = 1491
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 ccgttgaagatgttag 16
||||||||||||||||
Sbjct: 281 ccgttgaagatgttag 296
>At1g29970.F PTA.sd.2093.singlet
Length = 966
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 tggttgagataccaga 163
||||||||||||||||
Sbjct: 667 tggttgagataccaga 682
>PTA.sd.5712.C1 nseq=3
Length = 5092
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 22 ctgttttcccagctgg 37
||||||||||||||||
Sbjct: 779 ctgttttcccagctgg 794
>PTA.sd.17401.C1 nseq=7
Length = 840
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 taccagaaggaaatgg 172
||||||||||||||||
Sbjct: 486 taccagaaggaaatgg 501
>PTA.sd.16976.C1 nseq=13
Length = 1203
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 146 tgtggttgagataccagaaggaaa 169
||||||||| |||||||||||||
Sbjct: 737 tgtggttgatgtaccagaaggaaa 760
>PTA.sd.16053.C1 nseq=4
Length = 1734
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 ttgaagatgttagtcc 19
||||||||||||||||
Sbjct: 896 ttgaagatgttagtcc 911
>At3g32280.F
Length = 1425
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 100 tcaacatctttgatgt 115
||||||||||||||||
Sbjct: 1391 tcaacatctttgatgt 1406
>At4g15180.F PTA.sd.11892.singlet
Length = 7056
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 tattctggcatctga 295
|||||||||||||||
Sbjct: 3769 tattctggcatctga 3755
>At3g55270.F PTA.sd.10443.singlet
Length = 2199
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 tccaactgttttccc 31
|||||||||||||||
Sbjct: 1204 tccaactgttttccc 1190
>PTA.sd.9861.C1 nseq=3
Length = 2870
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 ccctttcaagaaatc 249
|||||||||||||||
Sbjct: 1713 ccctttcaagaaatc 1727
>PTA.sd.8509.C1 nseq=10
Length = 1832
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 aacatctttgatgtg 116
|||||||||||||||
Sbjct: 424 aacatctttgatgtg 410
>PTA.sd.7894.C1 nseq=6
Length = 2408
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 tcagctcaaaatgac 142
|||||||||||||||
Sbjct: 42 tcagctcaaaatgac 28
>PTA.sd.7711.C1 nseq=8
Length = 2167
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 ttgaagatgttagtc 18
|||||||||||||||
Sbjct: 1027 ttgaagatgttagtc 1041
>PTA.sd.7518.C1 nseq=11
Length = 3198
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 aaggaaatggctctg 177
|||||||||||||||
Sbjct: 2042 aaggaaatggctctg 2056
>PTA.sd.6811.C1 nseq=4
Length = 1324
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 ctttcaagaaatcct 251
|||||||||||||||
Sbjct: 655 ctttcaagaaatcct 641
>PTA.sd.489.C1 nseq=13
Length = 2741
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 tgccctttcaagaaa 247
|||||||||||||||
Sbjct: 1612 tgccctttcaagaaa 1626
>PTA.sd.3848.C1 nseq=3
Length = 2199
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 ccaactgttttccca 32
|||||||||||||||
Sbjct: 958 ccaactgttttccca 944
>PTA.sd.2473.C1 nseq=5
Length = 2950
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 tcgtgtgaatattct 286
|||||||||||||||
Sbjct: 922 tcgtgtgaatattct 908
>PTA.sd.2058.C1 nseq=22
Length = 2641
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 tgttttcccagctgg 37
|||||||||||||||
Sbjct: 745 tgttttcccagctgg 759
>PTA.sd.14842.C1 nseq=10
Length = 881
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 120 ttacggcctcagctcaaaa 138
||||||||||| |||||||
Sbjct: 657 ttacggcctcaactcaaaa 639
>PTA.sd.14456.C1 nseq=9
Length = 1905
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 caactgttttcccag 33
|||||||||||||||
Sbjct: 480 caactgttttcccag 466
>PTA.sd.13135.C1 nseq=9
Length = 5704
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 tttcaagaaatccta 252
|||||||||||||||
Sbjct: 1430 tttcaagaaatccta 1444
>PTA.sd.1219.C1 nseq=19
Length = 1374
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 tcccagctggacctc 42
|||||||||||||||
Sbjct: 1171 tcccagctggacctc 1157
>PTA.sd.10906.C1 nseq=4
Length = 1328
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 ggatacatcgtgacc 212
|||||||||||||||
Sbjct: 1088 ggatacatcgtgacc 1102
>At5g38270.F
Length = 1482
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 100 tcaacatctttgatgtgac 118
|||||| ||||||||||||
Sbjct: 740 tcaacaactttgatgtgac 722
>At5g37060.F
Length = 2580
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 142 cgggtgtggttgagatacc 160
|||||||||||||| ||||
Sbjct: 82 cgggtgtggttgagttacc 64
>At4g31570.F
Length = 8139
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 ctgtttgagaagaat 86
|||||||||||||||
Sbjct: 3454 ctgtttgagaagaat 3468
>At4g05610.F
Length = 987
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 tgtgaatattctggc 289
|||||||||||||||
Sbjct: 211 tgtgaatattctggc 197
>At4g02850.F
Length = 942
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 aactgtttgagaaga 84
|||||||||||||||
Sbjct: 316 aactgtttgagaaga 302
>At3g47760.F
Length = 1995
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 ccctttcaagaaatc 249
|||||||||||||||
Sbjct: 1059 ccctttcaagaaatc 1073
>At3g42600.F
Length = 660
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 tgccctttcaagaaa 247
|||||||||||||||
Sbjct: 589 tgccctttcaagaaa 603
>At3g28380.F
Length = 3723
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 gttttcccagctgga 38
|||||||||||||||
Sbjct: 1166 gttttcccagctgga 1152
>At1g60785.F
Length = 531
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 tcaacatctttgatg 114
|||||||||||||||
Sbjct: 74 tcaacatctttgatg 60
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)