BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00599
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.3703.C1 nseq=7 581 e-165
PTA.sd.8649.C1 nseq=3 34 0.56
PTA.sd.7339.C1 nseq=6 34 0.56
PTA.sd.4279.C1 nseq=6 34 0.56
PTA.sd.3997.C1 nseq=2 34 0.56
PTA.sd.1458.C1 nseq=3 34 0.56
PTA.sd.9512.C1 nseq=15 32 2.2
PTA.sd.16283.C1 nseq=7 32 2.2
PTA.sd.10028.C1 nseq=7 32 2.2
At5g49390.F 32 2.2
At5g04020.F 32 2.2
At1g51880.F 32 2.2
At5g13980.F PTA.sd.14809.singlet 30 8.7
At2g37160.F PTA.sd.6561.singlet 30 8.7
PTA.sd.8705.C1 nseq=2 30 8.7
>PTA.sd.3703.C1 nseq=7
Length = 1661
Score = 581 bits (293), Expect = e-165
Identities = 300/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1 cgccgatcccaaccctccaaccaccgtttacatgagcagcaacaacataccacaaacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cgccgatcccaaccctccaaccaccgtttacatgagcagcaacaacataccacaaacgct 805
Query: 61 acacaaaccgcttcaaccgcggaaaacaacgagaacggggacctctccattggtcctata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acacaaaccgcttcaaccgcggaaaacaacgagaacggggacctctccattggtcctata 865
Query: 121 ttgcctggacatcctttacaaagaagacaatccccaccgtcggaacaacaaccatccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttgcctggacatcctttacaaagaagacaatccccaccgtcggaacaacaaccatccact 925
Query: 181 ttgctctatcccttcgttac-taatggtagtatcgagcttcagctacttccatcgaggaa 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ttgctctatcccttcgttacttaatggtagtatcgagcttcagctacttccatcgaggaa 985
Query: 240 ttgtgctgatgagaccagccttagtctgtctatagggacaatggatcaaaagacaatgtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ttgtgctgatgagaccagccttagtctgtctatagggacaatggatcaaaagacaatgtc 1045
Query: 300 g 300
|
Sbjct: 1046 g 1046
>PTA.sd.8649.C1 nseq=3
Length = 2368
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 277 acaatggatcaaaagacaatg 297
||||||||||||| |||||||
Sbjct: 576 acaatggatcaaatgacaatg 556
>PTA.sd.7339.C1 nseq=6
Length = 1571
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 196 gttactaatggtagtat 212
|||||||||||||||||
Sbjct: 1430 gttactaatggtagtat 1414
>PTA.sd.4279.C1 nseq=6
Length = 1765
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 cttcagctacttccatc 233
|||||||||||||||||
Sbjct: 893 cttcagctacttccatc 877
>PTA.sd.3997.C1 nseq=2
Length = 1533
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7 tcccaaccctccaacca 23
|||||||||||||||||
Sbjct: 792 tcccaaccctccaacca 776
>PTA.sd.1458.C1 nseq=3
Length = 1524
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 cttcagctacttccatc 233
|||||||||||||||||
Sbjct: 835 cttcagctacttccatc 819
>PTA.sd.9512.C1 nseq=15
Length = 3256
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 166 caacaaccatccactt 181
||||||||||||||||
Sbjct: 2625 caacaaccatccactt 2640
>PTA.sd.16283.C1 nseq=7
Length = 1679
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 37 cagcaacaacataccacaaa 56
||||||||||||||| ||||
Sbjct: 111 cagcaacaacatacctcaaa 92
>PTA.sd.10028.C1 nseq=7
Length = 1040
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 cgtcggaacaacaacc 173
||||||||||||||||
Sbjct: 653 cgtcggaacaacaacc 668
>At5g49390.F
Length = 1269
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 tcagctacttccatcg 234
||||||||||||||||
Sbjct: 1016 tcagctacttccatcg 1001
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 tcagctacttccatcg 234
||||||||||||||||
Sbjct: 1079 tcagctacttccatcg 1064
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 tcagctacttccatc 233
|||||||||||||||
Sbjct: 890 tcagctacttccatc 876
>At5g04020.F
Length = 4488
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 61 acacaaaccgcttcaa 76
||||||||||||||||
Sbjct: 775 acacaaaccgcttcaa 760
>At1g51880.F
Length = 2619
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 236 ggaattgtgctgatgagacc 255
|||||||||||| |||||||
Sbjct: 1427 ggaattgtgctgttgagacc 1408
>At5g13980.F PTA.sd.14809.singlet
Length = 3093
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 277 acaatggatcaaaagacaa 295
||||||||||||| |||||
Sbjct: 1925 acaatggatcaaatgacaa 1943
>At2g37160.F PTA.sd.6561.singlet
Length = 1335
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 catgagcagcaacaa 45
|||||||||||||||
Sbjct: 511 catgagcagcaacaa 497
>PTA.sd.8705.C1 nseq=2
Length = 1956
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 aacgctacacaaacc 69
|||||||||||||||
Sbjct: 1094 aacgctacacaaacc 1080
>PTA.sd.8106.C1 nseq=16
Length = 1656
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ggaacaacaaccatc 176
|||||||||||||||
Sbjct: 927 ggaacaacaaccatc 913
>PTA.sd.777.C1 nseq=4
Length = 1148
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 tggatcaaaagacaa 295
|||||||||||||||
Sbjct: 469 tggatcaaaagacaa 455
>PTA.sd.744.C1 nseq=11
Length = 741
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 aacgctacacaaacc 69
|||||||||||||||
Sbjct: 528 aacgctacacaaacc 542
>PTA.sd.6591.C1 nseq=8
Length = 1233
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gagcagcaacaacat 48
|||||||||||||||
Sbjct: 944 gagcagcaacaacat 958
>PTA.sd.5964.C1 nseq=9
Length = 1395
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 ggatcaaaagacaat 296
|||||||||||||||
Sbjct: 284 ggatcaaaagacaat 298
>PTA.sd.4891.C1 nseq=9
Length = 1206
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 62 cacaaaccgcttcaaccgc 80
|||||| ||||||||||||
Sbjct: 670 cacaaaacgcttcaaccgc 652
>PTA.sd.3246.C1 nseq=12
Length = 2354
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 ccgatcccaaccctc 17
|||||||||||||||
Sbjct: 1099 ccgatcccaaccctc 1085
>PTA.sd.2763.C1 nseq=11
Length = 1192
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 tgctgatgagaccag 257
|||||||||||||||
Sbjct: 489 tgctgatgagaccag 475
>PTA.sd.2717.C1 nseq=3
Length = 2878
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cacaaaccgcttcaa 76
|||||||||||||||
Sbjct: 296 cacaaaccgcttcaa 310
>PTA.sd.2435.C1 nseq=18
Length = 1641
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 aaccgcttcaaccgc 80
|||||||||||||||
Sbjct: 1029 aaccgcttcaaccgc 1043
>PTA.sd.18045.C1 nseq=19
Length = 1894
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 caaccaccgtttaca 32
|||||||||||||||
Sbjct: 295 caaccaccgtttaca 281
>PTA.sd.14972.C1 nseq=3
Length = 1389
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 gcttcagctacttcc 230
|||||||||||||||
Sbjct: 23 gcttcagctacttcc 37
>PTA.sd.14318.C1 nseq=6
Length = 1553
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 aatggatcaaaagac 293
|||||||||||||||
Sbjct: 436 aatggatcaaaagac 450
>PTA.sd.14238.C1 nseq=4
Length = 1480
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 atcccaaccctccaa 20
|||||||||||||||
Sbjct: 1185 atcccaaccctccaa 1171
>PTA.sd.13983.C1 nseq=12
Length = 1279
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gagcagcaacaacat 48
|||||||||||||||
Sbjct: 880 gagcagcaacaacat 894
>PTA.sd.13887.C1 nseq=2
Length = 1559
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cacaaaccgcttcaa 76
|||||||||||||||
Sbjct: 788 cacaaaccgcttcaa 802
>PTA.sd.13300.C1 nseq=5
Length = 1041
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 aacaaccatccactt 181
|||||||||||||||
Sbjct: 118 aacaaccatccactt 132
>PTA.sd.12603.C1 nseq=11
Length = 1510
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 ccttagtctgtctat 272
|||||||||||||||
Sbjct: 1140 ccttagtctgtctat 1126
>PTA.sd.12544.C1 nseq=9
Length = 1417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 aaccgcttcaaccgc 80
|||||||||||||||
Sbjct: 245 aaccgcttcaaccgc 259
>PTA.sd.123.C2 nseq=18
Length = 2480
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 ccgcttcaaccgcgg 82
|||||||||||||||
Sbjct: 1518 ccgcttcaaccgcgg 1504
>PTA.sd.11742.C1 nseq=3
Length = 1623
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 cggaaaacaacgaga 94
|||||||||||||||
Sbjct: 1517 cggaaaacaacgaga 1503
>PTA.sd.10436.C1 nseq=2
Length = 6450
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 caccgtcggaacaac 169
|||||||||||||||
Sbjct: 3720 caccgtcggaacaac 3706
>At5g51380.F
Length = 1440
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 caaccaccgtttaca 32
|||||||||||||||
Sbjct: 285 caaccaccgtttaca 271
>At5g10570.F
Length = 948
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 tagggacaatggatc 286
|||||||||||||||
Sbjct: 526 tagggacaatggatc 512
>At3g18540.F
Length = 807
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 aaaacaacgagaacg 97
|||||||||||||||
Sbjct: 121 aaaacaacgagaacg 107
>At3g18300.F
Length = 825
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 ggaacaacaaccatc 176
|||||||||||||||
Sbjct: 78 ggaacaacaaccatc 92
>At3g15130.F
Length = 2070
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ggaacaacaaccatc 176
|||||||||||||||
Sbjct: 2052 ggaacaacaaccatc 2038
>At2g21235.F
Length = 1377
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 68 ccgcttcaaccgcggaaaa 86
||||| |||||||||||||
Sbjct: 345 ccgctccaaccgcggaaaa 363
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)