BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00529
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.11148.C1 nseq=25 595 e-170
PTA.sd.7370.C1 nseq=11 38 0.036
At3g22650.F 36 0.14
PTA.sd.8747.C1 nseq=4 34 0.56
PTA.sd.2929.C1 nseq=42 34 0.56
PTA.sd.15705.C1 nseq=10 34 0.56
PTA.sd.12180.C1 nseq=5 34 0.56
At5g65470.F PTA.sd.17907.singlet 32 2.2
PTA.sd.9992.C1 nseq=16 32 2.2
PTA.sd.5194.C1 nseq=2 32 2.2
PTA.sd.3651.C1 nseq=5 32 2.2
PTA.sd.18074.C1 nseq=2 32 2.2
PTA.sd.11522.C1 nseq=6 32 2.2
PTA.sd.10841.C1 nseq=8 32 2.2
At5g47140.F 32 2.2
>PTA.sd.11148.C1 nseq=25
Length = 1583
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ctaatactgttgctgatgaaatggatcaacttgaaaaggtggagaaatcaagtggagacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctaatactgttgctgatgaaatggatcaacttgaaaaggtggagaaatcaagtggagacg 1074
Query: 61 cagggaagaatctggttgatgtagcttgtgaaacgttaattacgtctgcagctgttaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 cagggaagaatctggttgatgtagcttgtgaaacgttaattacgtctgcagctgttaaga 1134
Query: 121 gagaaggaactgcgaaagaaacagtgtctgttgatgcagtatgttgcaaacctgttgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 gagaaggaactgcgaaagaaacagtgtctgttgatgcagtatgttgcaaacctgttgaac 1194
Query: 181 cacttaactttgatgacttcaattcaccagcagacatggaggttttggggatggagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 cacttaactttgatgacttcaattcaccagcagacatggaggttttggggatggagagat 1254
Query: 241 tgaagactgagcttcagtcacgtggtctgaagtgcggagggacattgcgagagcgagctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 tgaagactgagcttcagtcacgtggtctgaagtgcggagggacattgcgagagcgagctg 1314
>PTA.sd.7370.C1 nseq=11
Length = 2477
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 8 tgttgctgatgaaatggat 26
|||||||||||||||||||
Sbjct: 464 tgttgctgatgaaatggat 482
>At3g22650.F
Length = 1119
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 230 gatggagagattgaagac 247
||||||||||||||||||
Sbjct: 475 gatggagagattgaagac 492
>PTA.sd.8747.C1 nseq=4
Length = 2776
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 58 acgcagggaagaatctg 74
|||||||||||||||||
Sbjct: 1256 acgcagggaagaatctg 1272
>PTA.sd.2929.C1 nseq=42
Length = 1797
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 189 tttgatgacttcaattc 205
|||||||||||||||||
Sbjct: 1210 tttgatgacttcaattc 1194
>PTA.sd.15705.C1 nseq=10
Length = 1710
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 227 ggggatggagagattga 243
|||||||||||||||||
Sbjct: 1316 ggggatggagagattga 1332
>PTA.sd.12180.C1 nseq=5
Length = 1227
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 177 gaaccacttaactttga 193
|||||||||||||||||
Sbjct: 145 gaaccacttaactttga 129
>At5g65470.F PTA.sd.17907.singlet
Length = 1572
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 43 agaaatcaagtggaga 58
||||||||||||||||
Sbjct: 209 agaaatcaagtggaga 224
>PTA.sd.9992.C1 nseq=16
Length = 3086
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 172 ctgttgaaccacttaactttgatg 195
||||||||||| ||||||| ||||
Sbjct: 862 ctgttgaaccagttaacttcgatg 885
>PTA.sd.5194.C1 nseq=2
Length = 1687
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 ttgctgatgaaatgga 25
||||||||||||||||
Sbjct: 21 ttgctgatgaaatgga 6
>PTA.sd.3651.C1 nseq=5
Length = 15577
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 169 aacctgttgaaccact 184
||||||||||||||||
Sbjct: 4322 aacctgttgaaccact 4307
>PTA.sd.18074.C1 nseq=2
Length = 1864
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 197 cttcaattcaccagca 212
||||||||||||||||
Sbjct: 441 cttcaattcaccagca 426
>PTA.sd.11522.C1 nseq=6
Length = 765
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 36 aaggtggagaaatcaa 51
||||||||||||||||
Sbjct: 448 aaggtggagaaatcaa 433
>PTA.sd.10841.C1 nseq=8
Length = 3908
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 33 gaaaaggtggagaaat 48
||||||||||||||||
Sbjct: 2136 gaaaaggtggagaaat 2151
>At5g47140.F
Length = 1386
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 234 gagagattgaagactg 249
||||||||||||||||
Sbjct: 1049 gagagattgaagactg 1064
>At5g41840.F
Length = 1623
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 183 cttaactttgatgact 198
||||||||||||||||
Sbjct: 166 cttaactttgatgact 181
>At4g09710.F
Length = 3825
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 114 gttaagagagaaggaa 129
||||||||||||||||
Sbjct: 567 gttaagagagaaggaa 582
>At2g15300.F
Length = 2235
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 aaaggtggagaaatca 50
||||||||||||||||
Sbjct: 707 aaaggtggagaaatca 692
>At4g23510.F PTA.sd.12497.singlet
Length = 2604
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 tggggatggagagat 240
|||||||||||||||
Sbjct: 2107 tggggatggagagat 2121
>At2g33250.F PTA.sd.6278.singlet
Length = 1590
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 cagacatggaggttt 225
|||||||||||||||
Sbjct: 71 cagacatggaggttt 57
>PTA.sd.9544.C1 nseq=5
Length = 3223
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 tttggggatggagag 238
|||||||||||||||
Sbjct: 320 tttggggatggagag 306
>PTA.sd.8034.C1 nseq=35
Length = 4857
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 cctgttgaaccactt 185
|||||||||||||||
Sbjct: 2002 cctgttgaaccactt 2016
>PTA.sd.7889.C1 nseq=11
Length = 3394
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 ttgctgatgaaatgg 24
|||||||||||||||
Sbjct: 700 ttgctgatgaaatgg 714
>PTA.sd.6074.C1 nseq=4
Length = 1472
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 atgaaatggatcaac 30
|||||||||||||||
Sbjct: 1326 atgaaatggatcaac 1312
>PTA.sd.5701.C1 nseq=5
Length = 4306
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 ttgctgatgaaatgg 24
|||||||||||||||
Sbjct: 887 ttgctgatgaaatgg 901
>PTA.sd.4900.C1 nseq=19
Length = 2826
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 gttttggggatggag 236
|||||||||||||||
Sbjct: 711 gttttggggatggag 725
>PTA.sd.3984.C1 nseq=7
Length = 2277
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 229 ggatggagagattgaagac 247
||||| |||||||||||||
Sbjct: 2007 ggatgcagagattgaagac 2025
>PTA.sd.3975.C1 nseq=3
Length = 2677
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 acttgaaaaggtgga 43
|||||||||||||||
Sbjct: 1652 acttgaaaaggtgga 1666
>PTA.sd.3381.C1 nseq=2
Length = 1978
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 4 atactgttgctgatg 18
|||||||||||||||
Sbjct: 88 atactgttgctgatg 74
>PTA.sd.3118.C1 nseq=10
Length = 2133
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 gttgctgatgaaatg 23
|||||||||||||||
Sbjct: 730 gttgctgatgaaatg 716
>PTA.sd.2567.C1 nseq=9
Length = 1349
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 ggatggagagattga 243
|||||||||||||||
Sbjct: 1134 ggatggagagattga 1148
>PTA.sd.2417.C1 nseq=29
Length = 2214
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 tggatcaacttgaaa 36
|||||||||||||||
Sbjct: 2049 tggatcaacttgaaa 2035
>PTA.sd.2408.C1 nseq=8
Length = 5833
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gtctgttgatgcagt 160
|||||||||||||||
Sbjct: 767 gtctgttgatgcagt 781
>PTA.sd.2407.C1 nseq=7
Length = 6791
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gtctgttgatgcagt 160
|||||||||||||||
Sbjct: 1913 gtctgttgatgcagt 1927
>PTA.sd.1827.C1 nseq=2
Length = 1651
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 gaaaaggtggagaaa 47
|||||||||||||||
Sbjct: 1121 gaaaaggtggagaaa 1135
>PTA.sd.16653.C1 nseq=2
Length = 1672
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 tgttgctgatgaaat 22
|||||||||||||||
Sbjct: 1372 tgttgctgatgaaat 1386
>PTA.sd.16628.C1 nseq=10
Length = 1742
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 gaaatggatcaactt 32
|||||||||||||||
Sbjct: 342 gaaatggatcaactt 356
>PTA.sd.14847.C1 nseq=6
Length = 1022
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 tgttgctgatgaaat 22
|||||||||||||||
Sbjct: 529 tgttgctgatgaaat 543
>PTA.sd.14633.C1 nseq=17
Length = 1138
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 215 catggaggttttggggatg 233
|||||||||||||| ||||
Sbjct: 924 catggaggttttggtgatg 942
>PTA.sd.14576.C1 nseq=11
Length = 1096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 agaatctggttgatg 81
|||||||||||||||
Sbjct: 698 agaatctggttgatg 684
>PTA.sd.14384.C1 nseq=2
Length = 3666
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 ttgctgatgaaatgg 24
|||||||||||||||
Sbjct: 671 ttgctgatgaaatgg 685
>PTA.sd.13404.C1 nseq=6
Length = 2297
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 aaggaactgcgaaag 138
|||||||||||||||
Sbjct: 1589 aaggaactgcgaaag 1575
>PTA.sd.13252.C1 nseq=6
Length = 3432
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 ttcaccagcagacat 217
|||||||||||||||
Sbjct: 2217 ttcaccagcagacat 2203
>PTA.sd.12172.C1 nseq=10
Length = 2055
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 aaaggtggagaaatc 49
|||||||||||||||
Sbjct: 187 aaaggtggagaaatc 173
>PTA.sd.12147.C1 nseq=8
Length = 1674
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 gatggagagattgaa 244
|||||||||||||||
Sbjct: 482 gatggagagattgaa 496
>PTA.sd.1174.C1 nseq=5
Length = 2334
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 aaaggtggagaaatc 49
|||||||||||||||
Sbjct: 29 aaaggtggagaaatc 15
>PTA.sd.11579.C1 nseq=2
Length = 918
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 agcttgtgaaacgtt 97
|||||||||||||||
Sbjct: 722 agcttgtgaaacgtt 736
>PTA.sd.10955.C1 nseq=8
Length = 2703
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 aaggtggagaaatca 50
|||||||||||||||
Sbjct: 325 aaggtggagaaatca 311
>PTA.sd.10589.C1 nseq=8
Length = 4774
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 ttgctgatgaaatgg 24
|||||||||||||||
Sbjct: 1826 ttgctgatgaaatgg 1840
>PTA.sd.10385.C1 nseq=3
Length = 2272
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 tttggggatggagag 238
|||||||||||||||
Sbjct: 1094 tttggggatggagag 1080
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)