BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00511
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.1440.C1 nseq=13 595 e-170
PTA.sd.16324.C1 nseq=5 46 1e-04
PTA.sd.4646.C1 nseq=30 34 0.56
PTA.sd.13757.C1 nseq=2 34 0.56
At1g67320.F PTA.sd.3662.singlet 32 2.2
PTA.sd.2592.C1 nseq=3 32 2.2
At4g15070.F 32 2.2
At5g60930.F PTA.sd.17544.singlet 30 8.7
PTA.sd.8709.C1 nseq=2 30 8.7
PTA.sd.7675.C1 nseq=7 30 8.7
PTA.sd.6636.C1 nseq=6 30 8.7
PTA.sd.5695.C1 nseq=4 30 8.7
PTA.sd.3166.C1 nseq=9 30 8.7
PTA.sd.2299.C1 nseq=14 30 8.7
PTA.sd.17340.C1 nseq=4 30 8.7
>PTA.sd.1440.C1 nseq=13
Length = 1211
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tattcttccatggcttttatcttcgcaactacttctactctgacgttcttaaccacatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tattcttccatggcttttatcttcgcaactacttctactctgacgttcttaaccacatcg 289
Query: 61 cttcgcatggttacattcttgtagccccacagttgtgcaaattattgccgccgggagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttcgcatggttacattcttgtagccccacagttgtgcaaattattgccgccgggagggc 349
Query: 121 aagtggaagtggacgatgctggaagtgtgataaactgggcatcggaaaacctcaaagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagtggaagtggacgatgctggaagtgtgataaactgggcatcggaaaacctcaaagctc 409
Query: 181 acctaccaacttcggtaaatgctaatggaaaatacacctcactcgtgggccacagccgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acctaccaacttcggtaaatgctaatggaaaatacacctcactcgtgggccacagccgcg 469
Query: 241 gtgggaaaacggcgtttgcggttgcgctaggccatgccgcaacattagacccatccatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgggaaaacggcgtttgcggttgcgctaggccatgccgcaacattagacccatccatca 529
>PTA.sd.16324.C1 nseq=5
Length = 1099
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 228 ggccacagccgcggtgggaaaacggcgtttgcggt 262
||||| ||||||||||| ||||| |||||||||||
Sbjct: 406 ggccatagccgcggtggcaaaaccgcgtttgcggt 440
>PTA.sd.4646.C1 nseq=30
Length = 7386
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 tcgcaactacttctact 39
|||||||||||||||||
Sbjct: 891 tcgcaactacttctact 907
>PTA.sd.13757.C1 nseq=2
Length = 7123
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 tcgcaactacttctact 39
|||||||||||||||||
Sbjct: 795 tcgcaactacttctact 811
>At1g67320.F PTA.sd.3662.singlet
Length = 2571
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 138 gctggaagtgtgataa 153
||||||||||||||||
Sbjct: 731 gctggaagtgtgataa 746
>PTA.sd.2592.C1 nseq=3
Length = 1112
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 9 catggcttttatcttc 24
||||||||||||||||
Sbjct: 1094 catggcttttatcttc 1109
>At4g15070.F
Length = 2670
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 agggcaagtggaagtg 131
||||||||||||||||
Sbjct: 1265 agggcaagtggaagtg 1280
>At5g60930.F PTA.sd.17544.singlet
Length = 1926
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 agggcaagtggaagt 130
|||||||||||||||
Sbjct: 1797 agggcaagtggaagt 1811
>PTA.sd.8709.C1 nseq=2
Length = 579
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 aaatgctaatggaaaatac 215
|||||| ||||||||||||
Sbjct: 369 aaatgcgaatggaaaatac 387
>PTA.sd.7675.C1 nseq=7
Length = 3218
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 acattagacccatcc 296
|||||||||||||||
Sbjct: 1334 acattagacccatcc 1348
>PTA.sd.6636.C1 nseq=6
Length = 1648
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 gcgtttgcggttgcg 266
|||||||||||||||
Sbjct: 1244 gcgtttgcggttgcg 1230
>PTA.sd.5695.C1 nseq=4
Length = 1526
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 gccacagccgcggtg 243
|||||||||||||||
Sbjct: 432 gccacagccgcggtg 446
>PTA.sd.3166.C1 nseq=9
Length = 938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 ttcttccatggcttt 17
|||||||||||||||
Sbjct: 433 ttcttccatggcttt 419
>PTA.sd.2299.C1 nseq=14
Length = 2627
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 gcgtttgcggttgcg 266
|||||||||||||||
Sbjct: 789 gcgtttgcggttgcg 775
>PTA.sd.17340.C1 nseq=4
Length = 1934
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 191 ttcggtaaatgctaatgga 209
|||||||||||||| ||||
Sbjct: 1233 ttcggtaaatgctagtgga 1251
>PTA.sd.16807.C1 nseq=2
Length = 2473
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 aactacttctactct 41
|||||||||||||||
Sbjct: 33 aactacttctactct 47
>PTA.sd.15052.C1 nseq=2
Length = 1460
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 cctaccaacttcggt 196
|||||||||||||||
Sbjct: 348 cctaccaacttcggt 334
>PTA.sd.13550.C1 nseq=7
Length = 2015
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 tcttccatggctttt 18
|||||||||||||||
Sbjct: 45 tcttccatggctttt 59
>PTA.sd.13006.C1 nseq=2
Length = 1513
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 attcttccatggctt 16
|||||||||||||||
Sbjct: 505 attcttccatggctt 519
>PTA.sd.11085.C1 nseq=11
Length = 1500
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 actgggcatcggaaa 168
|||||||||||||||
Sbjct: 107 actgggcatcggaaa 93
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 cgcatggttacattc 78
|||||||||||||||
Sbjct: 344 cgcatggttacattc 358
>PTA.sd.1070.C1 nseq=6
Length = 1683
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 atgctggaagtgtga 150
|||||||||||||||
Sbjct: 1192 atgctggaagtgtga 1206
>PTA.sd.10577.C1 nseq=3
Length = 2837
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 cgttcttaaccacat 58
|||||||||||||||
Sbjct: 1812 cgttcttaaccacat 1826
>At5g51770.F
Length = 1965
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 cggcgtttgcggttg 264
|||||||||||||||
Sbjct: 173 cggcgtttgcggttg 159
>At4g36200.F
Length = 447
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 4 tcttccatggctttt 18
|||||||||||||||
Sbjct: 375 tcttccatggctttt 361
>At4g29920.F
Length = 3054
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 attcttccatggctt 16
|||||||||||||||
Sbjct: 2008 attcttccatggctt 1994
>At4g28670.F
Length = 1878
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 agttgtgcaaattat 105
|||||||||||||||
Sbjct: 596 agttgtgcaaattat 610
>At4g24580.F
Length = 2373
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 agtggaagtggacga 136
|||||||||||||||
Sbjct: 1560 agtggaagtggacga 1574
>At3g45810.F
Length = 2508
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 catggttacattctt 80
|||||||||||||||
Sbjct: 1573 catggttacattctt 1587
>At3g32030.F
Length = 1815
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 tcggaaaacctcaaa 176
|||||||||||||||
Sbjct: 504 tcggaaaacctcaaa 490
>At2g44900.F
Length = 2793
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tcggtaaatgctaat 206
|||||||||||||||
Sbjct: 1396 tcggtaaatgctaat 1410
>At2g34180.F
Length = 1509
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 gccacagccgcggtg 243
|||||||||||||||
Sbjct: 509 gccacagccgcggtg 523
>At2g14760.F
Length = 1560
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 gcgtttgcggttgcg 266
|||||||||||||||
Sbjct: 918 gcgtttgcggttgcg 932
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)