BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00441
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.6414.C1 nseq=6 595 e-170
At5g40030.F 38 0.036
PTA.sd.10969.C1 nseq=24 36 0.14
At1g32610.F PTA.sd.2268.singlet 34 0.56
PTA.sd.11197.C1 nseq=12 34 0.56
At1g09080.F 34 0.56
PTA.sd.18036.C1 nseq=7 32 2.2
PTA.sd.15012.C1 nseq=9 32 2.2
PTA.sd.14148.C1 nseq=2 32 2.2
At5g14770.F 32 2.2
At1g74400.F 32 2.2
At1g30060.F 32 2.2
At3g25740.F PTA.sd.9326.singlet 30 8.7
PTA.sd.9899.C1 nseq=7 30 8.7
PTA.sd.957.C1 nseq=15 30 8.7
>PTA.sd.6414.C1 nseq=6
Length = 2140
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 cgcaacctcgaatgaacatgcagggccctcttcaacctaaccagtatctaccaccacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 cgcaacctcgaatgaacatgcagggccctcttcaacctaaccagtatctaccaccacccg 1362
Query: 61 ggttagttcctagcccagtgcctcataatcttccttctcctcggttcaatgctcctgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 ggttagttcctagcccagtgcctcataatcttccttctcctcggttcaatgctcctgtac 1422
Query: 121 ctgtgacgcctactcagccctctcccatgttcagtcagatgtatggtggatttccttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 ctgtgacgcctactcagccctctcccatgttcagtcagatgtatggtggatttccttctc 1482
Query: 181 ctcgatataacggttttggaccactgcagtcacctacatcccaatttcttcaaccatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 ctcgatataacggttttggaccactgcagtcacctacatcccaatttcttcaaccatctc 1542
Query: 241 ctaccggttacccgaatatgttctctccgagatcgccttacccattgctgtcaccaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 ctaccggttacccgaatatgttctctccgagatcgccttacccattgctgtcaccaggag 1602
>At5g40030.F
Length = 1500
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 216 acatcccaatttcttcaac 234
|||||||||||||||||||
Sbjct: 366 acatcccaatttcttcaac 348
>PTA.sd.10969.C1 nseq=24
Length = 1269
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 223 aatttcttcaaccatctc 240
||||||||||||||||||
Sbjct: 856 aatttcttcaaccatctc 839
>At1g32610.F PTA.sd.2268.singlet
Length = 876
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 89 tcttccttctcctcggttcaa 109
||||||||||||||| |||||
Sbjct: 597 tcttccttctcctcgattcaa 617
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 ttccttctcctcgat 186
|||||||||||||||
Sbjct: 599 ttccttctcctcgat 613
>PTA.sd.11197.C1 nseq=12
Length = 1511
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 89 tcttccttctcctcggt 105
|||||||||||||||||
Sbjct: 303 tcttccttctcctcggt 319
>At1g09080.F
Length = 2037
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 83 tcataatcttccttctc 99
|||||||||||||||||
Sbjct: 1916 tcataatcttccttctc 1900
>PTA.sd.18036.C1 nseq=7
Length = 1507
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 96 tctcctcggttcaatg 111
||||||||||||||||
Sbjct: 1189 tctcctcggttcaatg 1204
>PTA.sd.15012.C1 nseq=9
Length = 1074
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 81 cctcataatcttccttctcc 100
|||||| |||||||||||||
Sbjct: 222 cctcatcatcttccttctcc 203
>PTA.sd.14148.C1 nseq=2
Length = 2194
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 168 ggatttccttctcctc 183
||||||||||||||||
Sbjct: 1399 ggatttccttctcctc 1414
>At5g14770.F
Length = 2817
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 225 tttcttcaaccatctc 240
||||||||||||||||
Sbjct: 2683 tttcttcaaccatctc 2668
>At1g74400.F
Length = 1389
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 gatgtatggtggattt 173
||||||||||||||||
Sbjct: 947 gatgtatggtggattt 962
>At1g30060.F
Length = 531
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 170 atttccttctcctcga 185
||||||||||||||||
Sbjct: 296 atttccttctcctcga 281
>At3g25740.F PTA.sd.9326.singlet
Length = 1035
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 tatggtggatttcct 176
|||||||||||||||
Sbjct: 463 tatggtggatttcct 477
>PTA.sd.9899.C1 nseq=7
Length = 6116
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 202 cactgcagtcacctacatc 220
||||| |||||||||||||
Sbjct: 3964 cactgaagtcacctacatc 3946
>PTA.sd.957.C1 nseq=15
Length = 1348
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 tatggtggatttcct 176
|||||||||||||||
Sbjct: 588 tatggtggatttcct 602
>PTA.sd.9212.C1 nseq=6
Length = 1179
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 cctcataatcttcct 95
|||||||||||||||
Sbjct: 38 cctcataatcttcct 52
>PTA.sd.9203.C1 nseq=4
Length = 1790
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 aatcttccttctcct 101
|||||||||||||||
Sbjct: 201 aatcttccttctcct 215
>PTA.sd.8126.C1 nseq=9
Length = 1930
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ataatcttccttctc 99
|||||||||||||||
Sbjct: 227 ataatcttccttctc 241
>PTA.sd.7664.C1 nseq=5
Length = 2857
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 ttcttcaaccatctc 240
|||||||||||||||
Sbjct: 882 ttcttcaaccatctc 868
>PTA.sd.5911.C1 nseq=43
Length = 2079
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 cattgctgtcaccag 297
|||||||||||||||
Sbjct: 1612 cattgctgtcaccag 1626
>PTA.sd.4726.C1 nseq=8
Length = 871
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 atcttccttctcctc 102
|||||||||||||||
Sbjct: 593 atcttccttctcctc 607
>PTA.sd.4612.C1 nseq=6
Length = 2389
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 ataatcttccttctc 99
|||||||||||||||
Sbjct: 1148 ataatcttccttctc 1134
>PTA.sd.3720.C1 nseq=6
Length = 2584
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 atcttccttctcctc 102
|||||||||||||||
Sbjct: 183 atcttccttctcctc 197
>PTA.sd.3483.C1 nseq=11
Length = 2186
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 227 tcttcaaccatctcc 241
|||||||||||||||
Sbjct: 1596 tcttcaaccatctcc 1582
>PTA.sd.2867.C1 nseq=4
Length = 1202
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 87 aatcttccttctcct 101
|||||||||||||||
Sbjct: 303 aatcttccttctcct 289
>PTA.sd.2148.C1 nseq=3
Length = 1582
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 gtcacctacatccca 223
|||||||||||||||
Sbjct: 136 gtcacctacatccca 150
>PTA.sd.17832.C1 nseq=8
Length = 1873
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ttccttctcctcggt 105
|||||||||||||||
Sbjct: 1508 ttccttctcctcggt 1494
>PTA.sd.17765.C1 nseq=10
Length = 3234
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 tcttccttctcctcg 103
|||||||||||||||
Sbjct: 2564 tcttccttctcctcg 2550
>PTA.sd.17617.C1 nseq=5
Length = 3545
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 ttcttcaaccatctc 240
|||||||||||||||
Sbjct: 1976 ttcttcaaccatctc 1962
>PTA.sd.176.C1 nseq=10
Length = 1141
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 tctccgagatcgcct 278
|||||||||||||||
Sbjct: 332 tctccgagatcgcct 318
>PTA.sd.17591.C1 nseq=8
Length = 1836
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 tacatcccaatttct 229
|||||||||||||||
Sbjct: 1469 tacatcccaatttct 1483
>PTA.sd.16079.C1 nseq=6
Length = 3027
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 ccaatttcttcaacc 235
|||||||||||||||
Sbjct: 638 ccaatttcttcaacc 624
>PTA.sd.15881.C1 nseq=9
Length = 3163
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 agatgtatggtggat 171
|||||||||||||||
Sbjct: 2353 agatgtatggtggat 2367
>PTA.sd.15158.C1 nseq=7
Length = 2236
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 ccctctcccatgttc 152
|||||||||||||||
Sbjct: 858 ccctctcccatgttc 844
>PTA.sd.14896.C1 nseq=8
Length = 1182
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 84 cataatcttccttctcctc 102
||||| |||||||||||||
Sbjct: 875 cataaccttccttctcctc 857
>PTA.sd.14566.C1 nseq=5
Length = 2706
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 ccttctcctcgatat 188
|||||||||||||||
Sbjct: 197 ccttctcctcgatat 183
>PTA.sd.1439.C1 nseq=7
Length = 4514
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 ccattgctgtcacca 296
|||||||||||||||
Sbjct: 4198 ccattgctgtcacca 4184
>PTA.sd.13185.C1 nseq=5
Length = 3474
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 82 ctcataatcttccttctcc 100
|||||| ||||||||||||
Sbjct: 173 ctcatactcttccttctcc 155
>PTA.sd.1311.C1 nseq=23
Length = 2680
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 tggtggatttccttc 178
|||||||||||||||
Sbjct: 1595 tggtggatttccttc 1609
>PTA.sd.11623.C1 nseq=22
Length = 1040
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 accactgcagtcacc 214
|||||||||||||||
Sbjct: 300 accactgcagtcacc 286
>PTA.sd.11509.C1 nseq=8
Length = 3407
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 acccgaatatgttct 264
|||||||||||||||
Sbjct: 1785 acccgaatatgttct 1799
>PTA.sd.10049.C1 nseq=3
Length = 742
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 ttcttcaaccatctc 240
|||||||||||||||
Sbjct: 475 ttcttcaaccatctc 461
>At5g52680.F
Length = 717
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 tgctcctgtacctgt 124
|||||||||||||||
Sbjct: 552 tgctcctgtacctgt 566
>At5g44630.F
Length = 1638
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 cgaatatgttctctc 267
|||||||||||||||
Sbjct: 169 cgaatatgttctctc 155
>At5g20440.F
Length = 654
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 caatttcttcaacca 236
|||||||||||||||
Sbjct: 195 caatttcttcaacca 209
>At3g44760.F
Length = 570
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 atcccaatttcttca 232
|||||||||||||||
Sbjct: 16 atcccaatttcttca 2
>At1g67500.F
Length = 5616
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tagcccagtgcctca 85
|||||||||||||||
Sbjct: 600 tagcccagtgcctca 614
>At1g37060.F
Length = 5205
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 tcttccttctcctcg 103
|||||||||||||||
Sbjct: 3235 tcttccttctcctcg 3249
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)