BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00423
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.3047.C1 nseq=6 595 e-170
PTA.sd.4749.C1 nseq=5 34 0.56
PTA.sd.17450.C1 nseq=9 34 0.56
PTA.sd.14018.C1 nseq=5 34 0.56
PTA.sd.13101.C1 nseq=14 34 0.56
At3g32210.F 34 0.56
At3g19060.F 34 0.56
PTA.sd.18080.C1 nseq=12 32 2.2
PTA.sd.11517.C1 nseq=2 32 2.2
At4g21470.F PTA.sd.12341.singlet 30 8.7
PTA.sd.8185.C1 nseq=4 30 8.7
PTA.sd.8106.C1 nseq=16 30 8.7
PTA.sd.539.C1 nseq=4 30 8.7
PTA.sd.2599.C1 nseq=7 30 8.7
PTA.sd.2361.C1 nseq=23 30 8.7
>PTA.sd.3047.C1 nseq=6
Length = 1153
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aatcagatgcttggagagctctctggacaataacactccataagatatttgcagcgattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatcagatgcttggagagctctctggacaataacactccataagatatttgcagcgattg 681
Query: 61 caatggggatagctcttctccgtatgatccctgaccgtcctttattctcctcaatcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caatggggatagctcttctccgtatgatccctgaccgtcctttattctcctcaatcactt 741
Query: 121 attctttcgcattcgccatctcgagcccaattggtgttgccatcgggatagtcatcgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attctttcgcattcgccatctcgagcccaattggtgttgccatcgggatagtcatcgatg 801
Query: 181 caacgactcaagggtccatcgcggattggatattcgcattgtcgatgagcttggcgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caacgactcaagggtccatcgcggattggatattcgcattgtcgatgagcttggcgtgtg 861
Query: 241 gggtatttgtgtatgtatctgtgaaccatttgttggcaaaagggtatcgaccaaacaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gggtatttgtgtatgtatctgtgaaccatttgttggcaaaagggtatcgaccaaacaaga 921
>PTA.sd.4749.C1 nseq=5
Length = 2611
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 249 gtgtatgtatctgtgaa 265
|||||||||||||||||
Sbjct: 89 gtgtatgtatctgtgaa 73
>PTA.sd.17450.C1 nseq=9
Length = 1314
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 60 gcaatggggatagctcttctc 80
|||||||| ||||||||||||
Sbjct: 772 gcaatgggaatagctcttctc 792
>PTA.sd.14018.C1 nseq=5
Length = 1141
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 256 tatctgtgaaccatttg 272
|||||||||||||||||
Sbjct: 366 tatctgtgaaccatttg 350
>PTA.sd.13101.C1 nseq=14
Length = 2145
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 cattgtcgatgagcttg 233
|||||||||||||||||
Sbjct: 335 cattgtcgatgagcttg 319
>At3g32210.F
Length = 1659
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 106 tctcctcaatcacttat 122
|||||||||||||||||
Sbjct: 849 tctcctcaatcacttat 865
>At3g19060.F
Length = 4944
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 98 tcctttattctcctcaa 114
|||||||||||||||||
Sbjct: 389 tcctttattctcctcaa 373
>PTA.sd.18080.C1 nseq=12
Length = 1643
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 52 cagcgattgcaatggg 67
||||||||||||||||
Sbjct: 318 cagcgattgcaatggg 333
>PTA.sd.11517.C1 nseq=2
Length = 2254
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 101 tttattctcctcaatc 116
||||||||||||||||
Sbjct: 924 tttattctcctcaatc 939
>At4g21470.F PTA.sd.12341.singlet
Length = 849
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 tagctcttctccgta 84
|||||||||||||||
Sbjct: 693 tagctcttctccgta 679
>PTA.sd.8185.C1 nseq=4
Length = 2872
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 16 gagctctctggacaataac 34
|||||||||||| ||||||
Sbjct: 2257 gagctctctggagaataac 2275
>PTA.sd.8106.C1 nseq=16
Length = 1656
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 284 gtatcgaccaaacaa 298
|||||||||||||||
Sbjct: 1073 gtatcgaccaaacaa 1059
>PTA.sd.539.C1 nseq=4
Length = 2431
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ccatttgttggcaaa 280
|||||||||||||||
Sbjct: 1349 ccatttgttggcaaa 1335
>PTA.sd.2599.C1 nseq=7
Length = 2475
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 252 tatgtatctgtgaac 266
|||||||||||||||
Sbjct: 1177 tatgtatctgtgaac 1163
>PTA.sd.2361.C1 nseq=23
Length = 1822
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 cccaattggtgttgc 160
|||||||||||||||
Sbjct: 222 cccaattggtgttgc 208
>PTA.sd.1866.C1 nseq=6
Length = 1069
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 ggatagctcttctcc 81
|||||||||||||||
Sbjct: 721 ggatagctcttctcc 707
>PTA.sd.17274.C1 nseq=21
Length = 3226
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 attgcaatggggata 71
|||||||||||||||
Sbjct: 916 attgcaatggggata 902
>PTA.sd.16195.C1 nseq=18
Length = 2336
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 agatgcttggagagc 19
|||||||||||||||
Sbjct: 1090 agatgcttggagagc 1076
>PTA.sd.16007.C1 nseq=17
Length = 2822
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 tatttgtgtatgtat 258
|||||||||||||||
Sbjct: 2740 tatttgtgtatgtat 2754
>PTA.sd.14959.C1 nseq=6
Length = 1293
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 gtcgatgagcttggc 235
|||||||||||||||
Sbjct: 113 gtcgatgagcttggc 127
>PTA.sd.13777.C1 nseq=3
Length = 1755
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ccatttgttggcaaa 280
|||||||||||||||
Sbjct: 1682 ccatttgttggcaaa 1668
>PTA.sd.13646.C1 nseq=8
Length = 841
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 ggagagctctctgga 27
|||||||||||||||
Sbjct: 370 ggagagctctctgga 356
>PTA.sd.1337.C1 nseq=8
Length = 3519
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctccgtatgatccc 91
|||||||||||||||
Sbjct: 2517 tctccgtatgatccc 2503
>PTA.sd.12540.C2 nseq=7
Length = 2427
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 cccaattggtgttgc 160
|||||||||||||||
Sbjct: 1358 cccaattggtgttgc 1344
>PTA.sd.11623.C1 nseq=22
Length = 1040
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 atgatccctgaccgt 98
|||||||||||||||
Sbjct: 577 atgatccctgaccgt 563
>PTA.sd.11436.C1 nseq=4
Length = 1784
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gggatagctcttctc 80
|||||||||||||||
Sbjct: 1076 gggatagctcttctc 1090
>At3g50450.F
Length = 570
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 acactccataagata 47
|||||||||||||||
Sbjct: 127 acactccataagata 141
>At3g19300.F
Length = 1992
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 92 tgaccgtcctttattctcctcaa 114
|||||||||||| ||||| ||||
Sbjct: 1848 tgaccgtcctttgttctcttcaa 1826
>At1g07690.F
Length = 495
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 tgcttggagagctct 22
|||||||||||||||
Sbjct: 247 tgcttggagagctct 233
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)