BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00353
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15643.C1 nseq=5 595 e-170
PTA.sd.6567.C1 nseq=4 34 0.56
PTA.sd.5140.C1 nseq=9 34 0.56
PTA.sd.9473.C1 nseq=5 32 2.2
PTA.sd.7746.C1 nseq=9 32 2.2
PTA.sd.7745.C1 nseq=10 32 2.2
PTA.sd.6886.C1 nseq=7 32 2.2
PTA.sd.3976.C1 nseq=4 32 2.2
PTA.sd.2767.C1 nseq=8 32 2.2
At3g13210.F 32 2.2
At3g05685.F PTA.sd.7831.singlet 30 8.7
PTA.sd.6122.C1 nseq=5 30 8.7
PTA.sd.5566.C1 nseq=5 30 8.7
PTA.sd.17171.C1 nseq=2 30 8.7
PTA.sd.16088.C1 nseq=11 30 8.7
>PTA.sd.15643.C1 nseq=5
Length = 1431
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ttgagcttataccgcatacaacaaagcctccacaaatgttatttgtagagaatgttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgagcttataccgcatacaacaaagcctccacaaatgttatttgtagagaatgttgttg 460
Query: 61 gatttgagacttcggatacacatatggaaatgattggtacattaacaaaattagattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gatttgagacttcggatacacatatggaaatgattggtacattaacaaaattagattatg 520
Query: 121 tcacacaagagtttatattgagtccgctgcagtttggtgtgccgtattcaagaccacgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcacacaagagtttatattgagtccgctgcagtttggtgtgccgtattcaagaccacgtt 580
Query: 181 atttctgcctggccaaaagaaaacctctgccatttaagtcccaacacagtaataacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atttctgcctggccaaaagaaaacctctgccatttaagtcccaacacagtaataacaaac 640
Query: 241 tactctggtctccagacccgttatatgggcgtgatgatcaggttgagtttggaaaatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tactctggtctccagacccgttatatgggcgtgatgatcaggttgagtttggaaaatgtc 700
>PTA.sd.6567.C1 nseq=4
Length = 2496
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 75 gatacacatatggaaatgatt 95
|||||||||||| ||||||||
Sbjct: 523 gatacacatatgaaaatgatt 543
>PTA.sd.5140.C1 nseq=9
Length = 826
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 101 attaacaaaattagatt 117
|||||||||||||||||
Sbjct: 789 attaacaaaattagatt 773
>PTA.sd.9473.C1 nseq=5
Length = 1358
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 cacacaagagtttata 137
||||||||||||||||
Sbjct: 875 cacacaagagtttata 890
>PTA.sd.7746.C1 nseq=9
Length = 837
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 50 gaatgttgttggattt 65
||||||||||||||||
Sbjct: 831 gaatgttgttggattt 816
>PTA.sd.7745.C1 nseq=10
Length = 1218
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 gaatgttgttggattt 65
||||||||||||||||
Sbjct: 1203 gaatgttgttggattt 1218
>PTA.sd.6886.C1 nseq=7
Length = 1279
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 191 ggccaaaagaaaacct 206
||||||||||||||||
Sbjct: 1173 ggccaaaagaaaacct 1158
>PTA.sd.3976.C1 nseq=4
Length = 1318
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 gagaatgttgttggat 63
||||||||||||||||
Sbjct: 503 gagaatgttgttggat 518
>PTA.sd.2767.C1 nseq=8
Length = 2116
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 101 attaacaaaattagat 116
||||||||||||||||
Sbjct: 592 attaacaaaattagat 607
>At3g13210.F
Length = 1974
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 15 catacaacaaagcctccaca 34
|||||||||||| |||||||
Sbjct: 1682 catacaacaaagactccaca 1701
>At3g05685.F PTA.sd.7831.singlet
Length = 543
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 acaacaaagcctcca 32
|||||||||||||||
Sbjct: 517 acaacaaagcctcca 531
>PTA.sd.6122.C1 nseq=5
Length = 1547
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 168 tcaagaccacgttatttct 186
|||||||||||| ||||||
Sbjct: 494 tcaagaccacgtaatttct 476
>PTA.sd.5566.C1 nseq=5
Length = 2075
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 49 agaatgttgttggatttga 67
|||||| ||||||||||||
Sbjct: 1213 agaatggtgttggatttga 1231
>PTA.sd.17171.C1 nseq=2
Length = 1675
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 233 taacaaactactctggtct 251
||||||| |||||||||||
Sbjct: 830 taacaaaatactctggtct 848
>PTA.sd.16088.C1 nseq=11
Length = 8898
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 273 gatgatcaggttgag 287
|||||||||||||||
Sbjct: 6536 gatgatcaggttgag 6550
>PTA.sd.15458.C1 nseq=9
Length = 14284
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 ttgtagagaatgttg 57
|||||||||||||||
Sbjct: 13029 ttgtagagaatgttg 13015
>PTA.sd.15315.C1 nseq=7
Length = 1757
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 98 tacattaacaaaattagat 116
||||| |||||||||||||
Sbjct: 1554 tacatcaacaaaattagat 1572
>PTA.sd.14127.C1 nseq=14
Length = 1462
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 aagcctccacaaatg 38
|||||||||||||||
Sbjct: 1174 aagcctccacaaatg 1160
>PTA.sd.13573.C1 nseq=2
Length = 994
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 tggccaaaagaaaac 204
|||||||||||||||
Sbjct: 229 tggccaaaagaaaac 215
>PTA.sd.13005.C1 nseq=2
Length = 1237
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 tgatgatcaggttga 286
|||||||||||||||
Sbjct: 312 tgatgatcaggttga 326
>PTA.sd.12123.C1 nseq=18
Length = 1306
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 gttgttggatttgag 68
|||||||||||||||
Sbjct: 242 gttgttggatttgag 228
>PTA.sd.12111.C1 nseq=3
Length = 2472
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 ggttgagtttggaaa 295
|||||||||||||||
Sbjct: 1187 ggttgagtttggaaa 1201
>PTA.sd.11733.C1 nseq=11
Length = 1015
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 acaacaaagcctcca 32
|||||||||||||||
Sbjct: 821 acaacaaagcctcca 807
>PTA.sd.11008.C1 nseq=10
Length = 1187
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 ttgttggatttgaga 69
|||||||||||||||
Sbjct: 1112 ttgttggatttgaga 1126
>At5g45120.F
Length = 1476
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 gccaaaagaaaacct 206
|||||||||||||||
Sbjct: 660 gccaaaagaaaacct 646
>At5g41250.F
Length = 1686
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 gatacacatatggaa 89
|||||||||||||||
Sbjct: 183 gatacacatatggaa 169
>At3g55670.F
Length = 657
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 35 aatgttatttgtagagaatgttg 57
|||| ||||||||||||| ||||
Sbjct: 624 aatgatatttgtagagaaagttg 602
>At3g13590.F
Length = 1542
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ctccacaaatgttat 42
|||||||||||||||
Sbjct: 475 ctccacaaatgttat 461
>At1g55535.F
Length = 351
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 atggaaatgattggt 98
|||||||||||||||
Sbjct: 7 atggaaatgattggt 21
>At1g05280.F
Length = 1386
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 ggttgagtttggaaa 295
|||||||||||||||
Sbjct: 924 ggttgagtttggaaa 910
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)