BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00329
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.8165.C1 nseq=8 595 e-170
PTA.sd.6918.C1 nseq=13 66 2e-10
At5g18710.F 42 0.002
PTA.sd.547.C1 nseq=2 34 0.56
PTA.sd.12275.C1 nseq=8 34 0.56
At2g18260.F 34 0.56
PTA.sd.9783.C1 nseq=7 32 2.2
PTA.sd.5857.C1 nseq=16 32 2.2
PTA.sd.1998.C1 nseq=8 32 2.2
PTA.sd.12635.C1 nseq=2 32 2.2
PTA.sd.12462.C1 nseq=7 32 2.2
PTA.sd.10086.C1 nseq=3 32 2.2
At5g18730.F 32 2.2
At1g73400.F 32 2.2
At1g11690.F 32 2.2
>PTA.sd.8165.C1 nseq=8
Length = 1289
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtaatcaaagtccaattagtgaaaaggggttttcttgtgagaagagaaagagaagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtaatcaaagtccaattagtgaaaaggggttttcttgtgagaagagaaagagaagctatg 140
Query: 61 agtgacgcgttttgttcggactgtaagaggcacacggaggttgtgtttgaccattccgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agtgacgcgttttgttcggactgtaagaggcacacggaggttgtgtttgaccattccgcc 200
Query: 121 ggagatacagtttgttcagagtgtggtctcgtgcttgaatctcactcaatcgatgaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagatacagtttgttcagagtgtggtctcgtgcttgaatctcactcaatcgatgaaact 260
Query: 181 tctgagtggcgtactttcgctaatgagtccggtgataatgatcctgttcgtgtcggtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgagtggcgtactttcgctaatgagtccggtgataatgatcctgttcgtgtcggtggt 320
Query: 241 ccgacgaatcctcttttagcagatggtggtctcactactgtcatttctaaacctaatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgacgaatcctcttttagcagatggtggtctcactactgtcatttctaaacctaatgga 380
>PTA.sd.6918.C1 nseq=13
Length = 1360
Score = 65.9 bits (33), Expect = 2e-10
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 118 gccggagatacagtttgttcagagtgtggtctcgtgcttgaatctcactcaatcgatgaa 177
||||||||||| |||| || ||||||||| | || | ||||||||||| || |||||
Sbjct: 259 gccggagataccctttgctccgagtgtggtttggttttggaatctcactccattgatgag 318
Query: 178 acttctgagtggcgtactttcgctaatga 206
|| |||||||||||||| |||||||||||
Sbjct: 319 acctctgagtggcgtaccttcgctaatga 347
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 tcgtgtcggtggtcc 242
|||||||||||||||
Sbjct: 369 tcgtgtcggtggtcc 383
>At5g18710.F
Length = 1557
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 gtgagaagagaaagagaagct 57
|||||||||||||||||||||
Sbjct: 178 gtgagaagagaaagagaagct 198
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 37 gtgagaagagaaagaga 53
|||||||||||||||||
Sbjct: 152 gtgagaagagaaagaga 168
>PTA.sd.547.C1 nseq=2
Length = 2234
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 39 gagaagagaaagagaag 55
|||||||||||||||||
Sbjct: 127 gagaagagaaagagaag 111
>PTA.sd.12275.C1 nseq=8
Length = 3297
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 39 gagaagagaaagagaag 55
|||||||||||||||||
Sbjct: 106 gagaagagaaagagaag 90
>At2g18260.F
Length = 858
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 160 tctcactcaatcgatgaaact 180
|||| ||||||||||||||||
Sbjct: 478 tctccctcaatcgatgaaact 458
>PTA.sd.9783.C1 nseq=7
Length = 2782
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 gtgagaagagaaagag 52
||||||||||||||||
Sbjct: 1518 gtgagaagagaaagag 1533
>PTA.sd.5857.C1 nseq=16
Length = 2645
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagagaa 54
||||||||||||||||
Sbjct: 394 gagaagagaaagagaa 409
>PTA.sd.1998.C1 nseq=8
Length = 3312
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 40 agaagagaaagagaag 55
||||||||||||||||
Sbjct: 112 agaagagaaagagaag 97
>PTA.sd.12635.C1 nseq=2
Length = 2546
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 aagagaaagagaagct 57
||||||||||||||||
Sbjct: 1283 aagagaaagagaagct 1298
>PTA.sd.12462.C1 nseq=7
Length = 1834
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 213 tgataatgatcctgtt 228
||||||||||||||||
Sbjct: 371 tgataatgatcctgtt 386
>PTA.sd.10086.C1 nseq=3
Length = 1082
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 210 cggtgataatgatcct 225
||||||||||||||||
Sbjct: 201 cggtgataatgatcct 186
>At5g18730.F
Length = 1890
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 gtgagaagagaaagag 52
||||||||||||||||
Sbjct: 209 gtgagaagagaaagag 224
>At1g73400.F
Length = 1401
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 gtgagaagagaaagag 52
||||||||||||||||
Sbjct: 1364 gtgagaagagaaagag 1379
>At1g11690.F
Length = 744
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 tgagaagagaaagaga 53
||||||||||||||||
Sbjct: 359 tgagaagagaaagaga 374
>At5g38380.F PTA.sd.15971.singlet
Length = 1077
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 166 agaagagaaagagaa 152
>At1g29890.F PTA.sd.2078.singlet
Length = 1197
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 235 agaagagaaagagaa 221
>PTA.sd.9473.C1 nseq=5
Length = 1358
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 577 agaagagaaagagaa 591
>PTA.sd.9259.C1 nseq=41
Length = 2377
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 gtgacgcgttttgtt 76
|||||||||||||||
Sbjct: 769 gtgacgcgttttgtt 755
>PTA.sd.8820.C1 nseq=8
Length = 869
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 cggtggtccgacgaa 248
|||||||||||||||
Sbjct: 407 cggtggtccgacgaa 421
>PTA.sd.8516.C1 nseq=3
Length = 981
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 agaagctatgagtga 65
|||||||||||||||
Sbjct: 239 agaagctatgagtga 225
>PTA.sd.8494.C1 nseq=14
Length = 2694
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 152 agaagagaaagagaa 166
>PTA.sd.8135.C1 nseq=4
Length = 1384
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 tgagaagagaaagag 52
|||||||||||||||
Sbjct: 139 tgagaagagaaagag 125
>PTA.sd.8080.C1 nseq=12
Length = 2906
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 cacacggaggttgtg 105
|||||||||||||||
Sbjct: 1822 cacacggaggttgtg 1836
>PTA.sd.7393.C1 nseq=13
Length = 981
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 380 gagaagagaaagaga 394
>PTA.sd.7113.C1 nseq=6
Length = 1530
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 atcctcttttagcag 262
|||||||||||||||
Sbjct: 768 atcctcttttagcag 782
>PTA.sd.706.C1 nseq=9
Length = 1966
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gaagagaaagagaag 55
|||||||||||||||
Sbjct: 210 gaagagaaagagaag 196
>PTA.sd.6762.C1 nseq=17
Length = 1715
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 132 agaagagaaagagaa 118
>PTA.sd.6599.C1 nseq=12
Length = 1483
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 494 gagaagagaaagaga 508
>PTA.sd.6144.C1 nseq=59
Length = 1256
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 35 gagaagagaaagaga 49
>PTA.sd.6075.C1 nseq=7
Length = 3047
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gaagagaaagagaag 55
|||||||||||||||
Sbjct: 113 gaagagaaagagaag 99
>PTA.sd.4193.C1 nseq=4
Length = 4336
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 tggtctcgtgcttga 158
|||||||||||||||
Sbjct: 3030 tggtctcgtgcttga 3044
>PTA.sd.3729.C1 nseq=6
Length = 1052
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 tgagaagagaaagag 52
|||||||||||||||
Sbjct: 791 tgagaagagaaagag 805
>PTA.sd.2199.C1 nseq=13
Length = 3421
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 gtgataatgatcctg 226
|||||||||||||||
Sbjct: 877 gtgataatgatcctg 891
>PTA.sd.1909.C1 nseq=2
Length = 732
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 aggggttttcttgtg 39
|||||||||||||||
Sbjct: 180 aggggttttcttgtg 166
>PTA.sd.188.C1 nseq=12
Length = 1684
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 79 gagaagagaaagaga 65
>PTA.sd.18005.C1 nseq=36
Length = 1669
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 gagaaagagaagcta 58
|||||||||||||||
Sbjct: 169 gagaaagagaagcta 155
>PTA.sd.17729.C1 nseq=4
Length = 1722
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 caattagtgaaaagg 27
|||||||||||||||
Sbjct: 1055 caattagtgaaaagg 1069
>PTA.sd.17623.C1 nseq=8
Length = 1479
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 1361 agaagagaaagagaa 1347
>PTA.sd.17575.C1 nseq=15
Length = 2648
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 gtgagaagagaaaga 51
|||||||||||||||
Sbjct: 21 gtgagaagagaaaga 7
>PTA.sd.17478.C1 nseq=14
Length = 775
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 gaaacttctgagtgg 189
|||||||||||||||
Sbjct: 388 gaaacttctgagtgg 402
>PTA.sd.17155.C1 nseq=5
Length = 2536
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 agaagagaaagagaa 54
|||||||||||||||
Sbjct: 2226 agaagagaaagagaa 2240
>PTA.sd.17131.C1 nseq=7
Length = 3035
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 gaagagaaagagaag 55
|||||||||||||||
Sbjct: 1381 gaagagaaagagaag 1395
>PTA.sd.14664.C1 nseq=9
Length = 1250
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 atcctcttttagcag 262
|||||||||||||||
Sbjct: 1155 atcctcttttagcag 1169
>PTA.sd.14562.C1 nseq=12
Length = 2469
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 tttcttgtgagaaga 45
|||||||||||||||
Sbjct: 2035 tttcttgtgagaaga 2021
>PTA.sd.1419.C1 nseq=16
Length = 2167
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 496 gagaagagaaagaga 510
>PTA.sd.13160.C1 nseq=6
Length = 2918
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 1019 gagaagagaaagaga 1033
>PTA.sd.1308.C1 nseq=17
Length = 1178
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 gatcctgttcgtgtc 234
|||||||||||||||
Sbjct: 30 gatcctgttcgtgtc 16
>PTA.sd.12967.C1 nseq=17
Length = 1720
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gagaagagaaagaga 53
|||||||||||||||
Sbjct: 30 gagaagagaaagaga 16
>PTA.sd.11861.C1 nseq=3
Length = 5031
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 agaaagagaagctatgagt 63
|||||||||||| ||||||
Sbjct: 705 agaaagagaagccatgagt 723
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)