BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00259
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17173.C1 nseq=7 563 e-160
At1g09680.F 36 0.14
PTA.sd.3595.C1 nseq=5 34 0.56
PTA.sd.2574.C1 nseq=15 34 0.56
PTA.sd.16088.C1 nseq=11 34 0.56
PTA.sd.15951.C1 nseq=3 34 0.56
At1g55770.F 34 0.56
At5g58450.F PTA.sd.17364.singlet 32 2.2
PTA.sd.952.C1 nseq=5 32 2.2
PTA.sd.9321.C1 nseq=4 32 2.2
PTA.sd.8044.C1 nseq=13 32 2.2
PTA.sd.6226.C1 nseq=3 32 2.2
PTA.sd.6211.C1 nseq=3 32 2.2
PTA.sd.5914.C1 nseq=4 32 2.2
PTA.sd.3365.C1 nseq=2 32 2.2
>PTA.sd.17173.C1 nseq=7
Length = 1603
Score = 563 bits (284), Expect = e-160
Identities = 296/300 (98%)
Strand = Plus / Plus
Query: 1 actcaaattcaattccctttgttcgtgaggttgaatttcggttgcaaacatttgggtttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 119 actcaaattcaattccctttgttcgtgaggttgaatttcggttgcaaacactggggtttg 178
Query: 61 ttgtaaattaaggttccgtttgtaaaagagattcctttttatttggggaaatcgaggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttgtaaattaaggttccgtttgtaaaagagattcctttttatttggggaaatcgaggagt 238
Query: 121 tcgtgtacggagctgagtttttgcctttttgatggttgcagataaggtctaaaatcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 239 tcgtgtacggagctgagtttttgcctttttgatggttgcagataaggtctaaattcttga 298
Query: 181 aggattcaaaaatttccgatgaatacacgttattccaatcagccggagttatcttctagt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggattcaaaagtttccgatgaatacacgttattccaatcagccggagttatcttctagt 358
Query: 241 aatatcacgatcactatttcatcgtctgctttgttaagctcctcaccgcgaggcgataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatatcacgatcactatttcatcgtctgctttgttaagctcctcaccgcgaggcgataac 418
>At1g09680.F
Length = 1824
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 131 agctgagtttttgccttt 148
||||||||||||||||||
Sbjct: 459 agctgagtttttgccttt 442
>PTA.sd.3595.C1 nseq=5
Length = 1187
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 157 tgcagataaggtctaaa 173
|||||||||||||||||
Sbjct: 772 tgcagataaggtctaaa 756
>PTA.sd.2574.C1 nseq=15
Length = 2312
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 123 gtgtacggagctgagtt 139
|||||||||||||||||
Sbjct: 390 gtgtacggagctgagtt 374
>PTA.sd.16088.C1 nseq=11
Length = 8898
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 168 tctaaaatcttgaagga 184
|||||||||||||||||
Sbjct: 896 tctaaaatcttgaagga 912
>PTA.sd.15951.C1 nseq=3
Length = 1450
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 136 agtttttgcctttttgatggt 156
|||||||||||||||| ||||
Sbjct: 291 agtttttgcctttttgttggt 271
>At1g55770.F
Length = 528
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 216 caatcagccggagttatcttc 236
||||||||||||||| |||||
Sbjct: 7 caatcagccggagttctcttc 27
>At5g58450.F PTA.sd.17364.singlet
Length = 3108
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 94 cctttttatttgggga 109
||||||||||||||||
Sbjct: 1282 cctttttatttgggga 1267
>PTA.sd.952.C1 nseq=5
Length = 1217
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 tttttgcctttttgat 153
||||||||||||||||
Sbjct: 17 tttttgcctttttgat 2
>PTA.sd.9321.C1 nseq=4
Length = 1918
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 96 tttttatttggggaaa 111
||||||||||||||||
Sbjct: 1833 tttttatttggggaaa 1848
>PTA.sd.8044.C1 nseq=13
Length = 2316
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 136 agtttttgcctttttg 151
||||||||||||||||
Sbjct: 1084 agtttttgcctttttg 1099
>PTA.sd.6226.C1 nseq=3
Length = 1792
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 143 gcctttttgatggttg 158
||||||||||||||||
Sbjct: 682 gcctttttgatggttg 667
>PTA.sd.6211.C1 nseq=3
Length = 1238
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 220 cagccggagttatctt 235
||||||||||||||||
Sbjct: 321 cagccggagttatctt 336
>PTA.sd.5914.C1 nseq=4
Length = 1669
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 96 tttttatttggggaaa 111
||||||||||||||||
Sbjct: 1513 tttttatttggggaaa 1528
>PTA.sd.3365.C1 nseq=2
Length = 2394
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 79 tttgtaaaagagattccttt 98
|||||||||||| |||||||
Sbjct: 1186 tttgtaaaagagcttccttt 1205
>PTA.sd.3341.C1 nseq=4
Length = 2250
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 aattcaattccctttg 21
||||||||||||||||
Sbjct: 1969 aattcaattccctttg 1984
>PTA.sd.26.C1 nseq=8
Length = 1367
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 agtttttgcctttttg 151
||||||||||||||||
Sbjct: 1209 agtttttgcctttttg 1194
>PTA.sd.16047.C1 nseq=6
Length = 1966
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 tttgtaaaagagattc 94
||||||||||||||||
Sbjct: 1093 tttgtaaaagagattc 1108
>PTA.sd.14279.C1 nseq=5
Length = 1995
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 agtttttgcctttttg 151
||||||||||||||||
Sbjct: 1859 agtttttgcctttttg 1844
>At5g49680.F
Length = 4137
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 178 tgaaggattcaaaaatttcc 197
||||||||||||||| ||||
Sbjct: 3365 tgaaggattcaaaaacttcc 3384
>At2g13930.F
Length = 4008
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 155 gttgcagataaggtct 170
||||||||||||||||
Sbjct: 169 gttgcagataaggtct 184
>At4g21320.F PTA.sd.12330.singlet
Length = 5211
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 gattcaaaaatttcc 197
|||||||||||||||
Sbjct: 140 gattcaaaaatttcc 126
>At3g20730.F PTA.sd.8986.singlet
Length = 1695
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 tggggaaatcgagga 118
|||||||||||||||
Sbjct: 1095 tggggaaatcgagga 1109
>PTA.sd.9819.C1 nseq=19
Length = 696
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 cggagctgagttttt 142
|||||||||||||||
Sbjct: 466 cggagctgagttttt 452
>PTA.sd.8225.C1 nseq=27
Length = 1255
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 agccggagttatctt 235
|||||||||||||||
Sbjct: 848 agccggagttatctt 834
>PTA.sd.7523.C1 nseq=9
Length = 1898
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 4 caaattcaattccct 18
|||||||||||||||
Sbjct: 47 caaattcaattccct 33
>PTA.sd.6247.C1 nseq=2
Length = 3252
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 ttgatggttgcagat 163
|||||||||||||||
Sbjct: 1552 ttgatggttgcagat 1566
>PTA.sd.5510.C1 nseq=23
Length = 6544
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 47 aacatttgggtttgt 61
|||||||||||||||
Sbjct: 3064 aacatttgggtttgt 3078
>PTA.sd.5241.C1 nseq=7
Length = 1697
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 aaaaatttccgatga 202
|||||||||||||||
Sbjct: 79 aaaaatttccgatga 65
>PTA.sd.4841.C1 nseq=10
Length = 2111
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 aaagagattcctttt 99
|||||||||||||||
Sbjct: 967 aaagagattcctttt 981
>PTA.sd.4808.C1 nseq=5
Length = 1118
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 tttgtaaaagagatt 93
|||||||||||||||
Sbjct: 99 tttgtaaaagagatt 85
>PTA.sd.4105.C1 nseq=5
Length = 1244
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 tcggttgcaaacatt 52
|||||||||||||||
Sbjct: 1033 tcggttgcaaacatt 1019
>PTA.sd.2147.C1 nseq=6
Length = 1699
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 tttgttcgtgaggtt 32
|||||||||||||||
Sbjct: 871 tttgttcgtgaggtt 885
>PTA.sd.1937.C1 nseq=14
Length = 2161
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 85 aaagagattcctttttatt 103
|||||||||||||| ||||
Sbjct: 1298 aaagagattcctttatatt 1316
>PTA.sd.17580.C1 nseq=7
Length = 1106
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 acatttgggtttgtt 62
|||||||||||||||
Sbjct: 569 acatttgggtttgtt 555
>PTA.sd.16931.C1 nseq=12
Length = 1176
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 acgttattccaatca 221
|||||||||||||||
Sbjct: 660 acgttattccaatca 674
>PTA.sd.16265.C1 nseq=15
Length = 5417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 ttttgatggttgcag 161
|||||||||||||||
Sbjct: 2799 ttttgatggttgcag 2785
>PTA.sd.15920.C1 nseq=2
Length = 1574
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 ccggagttatcttct 237
|||||||||||||||
Sbjct: 315 ccggagttatcttct 301
>PTA.sd.15418.C1 nseq=27
Length = 750
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 ggggaaatcgaggag 119
|||||||||||||||
Sbjct: 329 ggggaaatcgaggag 315
>PTA.sd.15103.C1 nseq=14
Length = 1293
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 tccctttgttcgtga 28
|||||||||||||||
Sbjct: 578 tccctttgttcgtga 564
>PTA.sd.15061.C1 nseq=3
Length = 690
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 ctcaaattcaattcc 16
|||||||||||||||
Sbjct: 132 ctcaaattcaattcc 118
>PTA.sd.14436.C1 nseq=6
Length = 736
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 agtttttgccttttt 150
|||||||||||||||
Sbjct: 633 agtttttgccttttt 619
>PTA.sd.14135.C1 nseq=9
Length = 1906
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 taaaatcttgaagga 184
|||||||||||||||
Sbjct: 1743 taaaatcttgaagga 1729
>PTA.sd.14110.C1 nseq=6
Length = 1268
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 51 tttgggtttgttgtaaatt 69
|||||| ||||||||||||
Sbjct: 1132 tttggggttgttgtaaatt 1150
>PTA.sd.13105.C1 nseq=6
Length = 869
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 42 ttgcaaacatttgggtttg 60
|||||| ||||||||||||
Sbjct: 675 ttgcaagcatttgggtttg 693
>PTA.sd.12437.C1 nseq=3
Length = 2102
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 acggagctgagtttt 141
|||||||||||||||
Sbjct: 1186 acggagctgagtttt 1200
>PTA.sd.12416.C1 nseq=10
Length = 1575
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 agtttttgccttttt 150
|||||||||||||||
Sbjct: 900 agtttttgccttttt 886
>PTA.sd.12244.C1 nseq=6
Length = 3127
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 cctttttatttgggg 108
|||||||||||||||
Sbjct: 2171 cctttttatttgggg 2157
>PTA.sd.12123.C1 nseq=18
Length = 1306
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 atcttctagtaatat 245
|||||||||||||||
Sbjct: 1086 atcttctagtaatat 1100
>PTA.sd.11041.C1 nseq=5
Length = 1540
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 ttgttgtaaattaag 72
|||||||||||||||
Sbjct: 1472 ttgttgtaaattaag 1486
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)