BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00235
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17354.C1 nseq=13 579 e-165
At2g31510.F PTA.sd.6154.singlet 34 0.56
PTA.sd.5851.C1 nseq=7 34 0.56
PTA.sd.500.C1 nseq=19 32 2.2
PTA.sd.3678.C1 nseq=4 32 2.2
PTA.sd.15703.C1 nseq=2 32 2.2
PTA.sd.14728.C1 nseq=3 32 2.2
At3g45720.F 32 2.2
PTA.sd.8913.C1 nseq=19 30 8.7
PTA.sd.7383.C1 nseq=21 30 8.7
PTA.sd.6415.C1 nseq=6 30 8.7
PTA.sd.6039.C1 nseq=14 30 8.7
PTA.sd.3881.C1 nseq=7 30 8.7
PTA.sd.3593.C1 nseq=98 30 8.7
PTA.sd.2719.C1 nseq=3 30 8.7
>PTA.sd.17354.C1 nseq=13
Length = 2165
Score = 579 bits (292), Expect = e-165
Identities = 298/300 (99%)
Strand = Plus / Plus
Query: 1 cgatgagacgtattctcagagttcttcccattcagggtcttactccaacctcaactacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 cgatgagacgtattctcagagttcttcccattcagggtcttactccaacctcaactacat 1718
Query: 61 agctgttgatgagtacagctaccaatctcctgttatgagcagaactcacaacatgacgag 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 agctgttgatgagtacagctcccaatctcctgttatgagcagaactcacaacatgacgag 1778
Query: 121 gttttgccccgaagaaagctctcatctacagtcaggacaagccaacgcgtatgcagcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 gttttgccccgaagaaagctctcatctacagtcaggacaagccaacgcgtatgcagcttc 1838
Query: 181 cagttcaagtaacagaagcttggcttcagacaaccgcacacttacaaggaaccgatcact 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 cagttcaactaacagaagcttggcttcagacaaccgcacacttacaaggaaccgatcact 1898
Query: 241 tgtagacgtgcagagacagttactgcaccggtcgccaggggaagaggctagaaaaagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 tgtagacgtgcagagacagttactgcaccggtcgccaggggaagaggctagaaaaagaag 1958
>At2g31510.F PTA.sd.6154.singlet
Length = 1698
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 agaagcttggcttcaga 210
|||||||||||||||||
Sbjct: 1080 agaagcttggcttcaga 1096
>PTA.sd.5851.C1 nseq=7
Length = 4286
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 43 ctccaacctcaactaca 59
|||||||||||||||||
Sbjct: 3243 ctccaacctcaactaca 3227
>PTA.sd.500.C1 nseq=19
Length = 1671
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 cttccagttcaagtaa 192
||||||||||||||||
Sbjct: 323 cttccagttcaagtaa 338
>PTA.sd.3678.C1 nseq=4
Length = 2868
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 120 ggttttgccccgaagaaagc 139
|||||||| |||||||||||
Sbjct: 2247 ggttttgctccgaagaaagc 2228
>PTA.sd.15703.C1 nseq=2
Length = 1110
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 138 gctctcatctacagtc 153
||||||||||||||||
Sbjct: 133 gctctcatctacagtc 148
>PTA.sd.14728.C1 nseq=3
Length = 6207
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 agtaacagaagcttgg 203
||||||||||||||||
Sbjct: 3308 agtaacagaagcttgg 3323
>At3g45720.F
Length = 1668
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 ttctcagagttcttcc 28
||||||||||||||||
Sbjct: 962 ttctcagagttcttcc 977
>PTA.sd.8913.C1 nseq=19
Length = 1331
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 gaagaaagctctcat 145
|||||||||||||||
Sbjct: 968 gaagaaagctctcat 982
>PTA.sd.7383.C1 nseq=21
Length = 1988
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 gccaggggaagaggc 288
|||||||||||||||
Sbjct: 547 gccaggggaagaggc 533
>PTA.sd.6415.C1 nseq=6
Length = 869
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 ggaagaggctagaaa 294
|||||||||||||||
Sbjct: 436 ggaagaggctagaaa 450
>PTA.sd.6039.C1 nseq=14
Length = 3239
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 acagaagcttggctt 206
|||||||||||||||
Sbjct: 2705 acagaagcttggctt 2719
>PTA.sd.3881.C1 nseq=7
Length = 1236
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 ttctcagagttcttc 27
|||||||||||||||
Sbjct: 420 ttctcagagttcttc 434
>PTA.sd.3593.C1 nseq=98
Length = 1482
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 194 agaagcttggcttcagaca 212
||||||||||||| |||||
Sbjct: 913 agaagcttggcttgagaca 931
>PTA.sd.2719.C1 nseq=3
Length = 2122
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 tattctcagagttct 25
|||||||||||||||
Sbjct: 661 tattctcagagttct 647
>PTA.sd.2509.C2 nseq=2
Length = 1479
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 ttactccaacctcaa 54
|||||||||||||||
Sbjct: 505 ttactccaacctcaa 491
>PTA.sd.1941.C1 nseq=3
Length = 4007
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 gacgaggttttgccc 129
|||||||||||||||
Sbjct: 3426 gacgaggttttgccc 3440
>PTA.sd.17718.C1 nseq=6
Length = 1722
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 tgcagcttccagttc 186
|||||||||||||||
Sbjct: 501 tgcagcttccagttc 487
>PTA.sd.17084.C1 nseq=3
Length = 1889
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 cttggcttcagacaa 213
|||||||||||||||
Sbjct: 707 cttggcttcagacaa 721
>PTA.sd.1656.C1 nseq=11
Length = 1942
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 cgaagaaagctctca 144
|||||||||||||||
Sbjct: 1445 cgaagaaagctctca 1431
>PTA.sd.16207.C1 nseq=5
Length = 1705
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 ggtcttactccaacc 50
|||||||||||||||
Sbjct: 521 ggtcttactccaacc 535
>PTA.sd.15492.C1 nseq=11
Length = 1797
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 ttcttcccattcagg 36
|||||||||||||||
Sbjct: 967 ttcttcccattcagg 953
>PTA.sd.14989.C1 nseq=4
Length = 1988
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 gcagcttccagttca 187
|||||||||||||||
Sbjct: 1709 gcagcttccagttca 1695
>PTA.sd.14139.C1 nseq=3
Length = 3054
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 aagcttggcttcaga 210
|||||||||||||||
Sbjct: 1430 aagcttggcttcaga 1444
>PTA.sd.13749.C1 nseq=10
Length = 1186
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 gaaccgatcacttgt 243
|||||||||||||||
Sbjct: 1003 gaaccgatcacttgt 989
>PTA.sd.11652.C1 nseq=12
Length = 1800
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 aagcttggcttcaga 210
|||||||||||||||
Sbjct: 319 aagcttggcttcaga 333
>PTA.sd.10302.C1 nseq=5
Length = 3121
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 ttctcagagttcttc 27
|||||||||||||||
Sbjct: 586 ttctcagagttcttc 600
>At5g60080.F
Length = 1134
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 ttcagggtcttactc 45
|||||||||||||||
Sbjct: 497 ttcagggtcttactc 511
>At5g48270.F
Length = 969
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 aaagctctcatctac 149
|||||||||||||||
Sbjct: 843 aaagctctcatctac 829
>At5g26580.F
Length = 915
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 ctctcatctacagtc 153
|||||||||||||||
Sbjct: 134 ctctcatctacagtc 148
>At5g14470.F
Length = 1101
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 ttactccaacctcaa 54
|||||||||||||||
Sbjct: 807 ttactccaacctcaa 821
>At3g24330.F
Length = 1503
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 46 caacctcaactacatagctgttg 68
|||| |||| |||||||||||||
Sbjct: 372 caacatcaagtacatagctgttg 394
>At3g05960.F
Length = 1524
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 caacatgacgaggtt 123
|||||||||||||||
Sbjct: 399 caacatgacgaggtt 385
>At2g13200.F
Length = 1314
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 148 acagtcaggacaagccaac 166
|||| ||||||||||||||
Sbjct: 1179 acagacaggacaagccaac 1197
>At1g60350.F
Length = 963
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 gcttccagttcaagt 190
|||||||||||||||
Sbjct: 412 gcttccagttcaagt 398
>At1g60340.F
Length = 1116
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 gcttccagttcaagt 190
|||||||||||||||
Sbjct: 415 gcttccagttcaagt 401
>At1g60300.F
Length = 969
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 gcttccagttcaagt 190
|||||||||||||||
Sbjct: 415 gcttccagttcaagt 401
>At1g07560.F
Length = 2571
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 acatagctgttgatg 71
|||||||||||||||
Sbjct: 1958 acatagctgttgatg 1972
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)