BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00165
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67020.F 587 e-167
PTA.sd.13415.C1 nseq=7 34 0.55
PTA.sd.17258.C1 nseq=2 32 2.2
PTA.sd.1505.C1 nseq=105 32 2.2
PTA.sd.14790.C1 nseq=8 32 2.2
PTA.sd.14165.C1 nseq=12 32 2.2
PTA.sd.1390.C1 nseq=3 32 2.2
PTA.sd.10728.C1 nseq=7 32 2.2
At1g21620.F 32 2.2
PTA.sd.7963.C1 nseq=5 30 8.6
PTA.sd.7745.C1 nseq=10 30 8.6
PTA.sd.739.C1 nseq=6 30 8.6
PTA.sd.6895.C1 nseq=8 30 8.6
PTA.sd.6894.C1 nseq=5 30 8.6
PTA.sd.6694.C1 nseq=6 30 8.6
>At1g67020.F
Length = 1980
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 ttttgctacgatagattctgcacagttgctaagattggatgatgccactttgatgaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ttttgctacgatagattctgcacagttgctaagattggatgatgccactttgatgaattc 1286
Query: 61 agcactgaagaggaagtgtagcaagtcttggcactttatatataaacattacaaagtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 agcactgaagaggaagtgtagcaagtcttggcactttatatataaacattacaaagtgag 1346
Query: 121 aatgcagaatctccataccgggatctacaaaactcaaaggccatggcattgtcttgtcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 aatgcagaatctccataccgggatctacaaaactcaaaggccatggcattgtcttgtcca 1406
Query: 181 tgaggcaaacaacactgattctcatttgtggcatcgttggaaaaccaaagttgagacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 tgaggcaaacaacactgattctcatttgtggcatcgttggaaaaccaaagttgagacatt 1466
Query: 241 gcaggaaatttcagaatttctaagttggggtttggtgcattctcattccagcgaag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 gcaggaaatttcagaatttctaagttggggtttggtgcattctcattccagcgaag 1522
>PTA.sd.13415.C1 nseq=7
Length = 1833
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 attcagcactgaagagg 73
|||||||||||||||||
Sbjct: 808 attcagcactgaagagg 792
>PTA.sd.17258.C1 nseq=2
Length = 3668
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 agcactgaagaggaag 76
||||||||||||||||
Sbjct: 2350 agcactgaagaggaag 2365
>PTA.sd.1505.C1 nseq=105
Length = 1110
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 63 cactgaagaggaagtg 78
||||||||||||||||
Sbjct: 865 cactgaagaggaagtg 880
>PTA.sd.14790.C1 nseq=8
Length = 1384
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 gacattgcaggaaatt 250
||||||||||||||||
Sbjct: 1065 gacattgcaggaaatt 1080
>PTA.sd.14165.C1 nseq=12
Length = 2370
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 49 tttgatgaattcagca 64
||||||||||||||||
Sbjct: 1627 tttgatgaattcagca 1612
>PTA.sd.1390.C1 nseq=3
Length = 663
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 13 agattctgcacagttg 28
||||||||||||||||
Sbjct: 641 agattctgcacagttg 626
>PTA.sd.10728.C1 nseq=7
Length = 3690
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 taagttggggtttggt 276
||||||||||||||||
Sbjct: 3435 taagttggggtttggt 3450
>At1g21620.F
Length = 927
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 265 ttggggtttggtgcat 280
||||||||||||||||
Sbjct: 834 ttggggtttggtgcat 849
>PTA.sd.7963.C1 nseq=5
Length = 1697
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 agacattgcaggaaa 248
|||||||||||||||
Sbjct: 489 agacattgcaggaaa 475
>PTA.sd.7745.C1 nseq=10
Length = 1218
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 271 tttggtgcattctca 285
|||||||||||||||
Sbjct: 295 tttggtgcattctca 281
>PTA.sd.739.C1 nseq=6
Length = 3788
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 177 tccatgaggcaaaca 191
|||||||||||||||
Sbjct: 3071 tccatgaggcaaaca 3085
>PTA.sd.6895.C1 nseq=8
Length = 631
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 tgtggcatcgttgga 221
|||||||||||||||
Sbjct: 153 tgtggcatcgttgga 139
>PTA.sd.6894.C1 nseq=5
Length = 912
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 tgtggcatcgttgga 221
|||||||||||||||
Sbjct: 115 tgtggcatcgttgga 101
>PTA.sd.6694.C1 nseq=6
Length = 720
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 246 aaatttcagaatttc 260
|||||||||||||||
Sbjct: 113 aaatttcagaatttc 99
>PTA.sd.6118.C1 nseq=10
Length = 1965
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 ttggaaaaccaaagt 231
|||||||||||||||
Sbjct: 883 ttggaaaaccaaagt 869
>PTA.sd.5295.C1 nseq=2
Length = 1050
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 aacaacactgattct 202
|||||||||||||||
Sbjct: 777 aacaacactgattct 763
>PTA.sd.491.C1 nseq=12
Length = 2917
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 cactttatatataaa 106
|||||||||||||||
Sbjct: 2889 cactttatatataaa 2903
>PTA.sd.4388.C1 nseq=2
Length = 4683
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 gtttggtgcattctc 284
|||||||||||||||
Sbjct: 4518 gtttggtgcattctc 4504
>PTA.sd.17836.C1 nseq=5
Length = 2048
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 gttggggtttggtgc 278
|||||||||||||||
Sbjct: 314 gttggggtttggtgc 300
>PTA.sd.16477.C1 nseq=5
Length = 3202
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 tagattctgcacagt 26
|||||||||||||||
Sbjct: 3021 tagattctgcacagt 3007
>PTA.sd.16399.C1 nseq=2
Length = 1195
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 aaaaccaaagttgag 235
|||||||||||||||
Sbjct: 285 aaaaccaaagttgag 299
>PTA.sd.16346.C1 nseq=6
Length = 1081
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 aaaccaaagttgaga 236
|||||||||||||||
Sbjct: 834 aaaccaaagttgaga 848
>PTA.sd.15641.C1 nseq=4
Length = 1110
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 atataaacattacaa 114
|||||||||||||||
Sbjct: 1065 atataaacattacaa 1051
>PTA.sd.15471.C1 nseq=2
Length = 882
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 aggaagtgtagcaag 85
|||||||||||||||
Sbjct: 639 aggaagtgtagcaag 625
>PTA.sd.14821.C1 nseq=30
Length = 2136
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 catgaggcaaacaac 193
|||||||||||||||
Sbjct: 714 catgaggcaaacaac 700
>PTA.sd.13795.C1 nseq=3
Length = 506
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 ggatgatgccacttt 51
|||||||||||||||
Sbjct: 149 ggatgatgccacttt 163
>PTA.sd.12974.C1 nseq=4
Length = 2939
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 aagtgagaatgcaga 128
|||||||||||||||
Sbjct: 2030 aagtgagaatgcaga 2044
>PTA.sd.12482.C1 nseq=2
Length = 1443
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 cagaatctccatacc 139
|||||||||||||||
Sbjct: 111 cagaatctccatacc 97
>PTA.sd.12252.C1 nseq=10
Length = 2054
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 95 tttatatataaacattaca 113
|||||||||||| ||||||
Sbjct: 2029 tttatatataaagattaca 2047
>PTA.sd.11394.C1 nseq=16
Length = 1343
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 agaatctccataccg 140
|||||||||||||||
Sbjct: 577 agaatctccataccg 563
>PTA.sd.10649.C1 nseq=4
Length = 3769
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ttgatgaattcagca 64
|||||||||||||||
Sbjct: 1765 ttgatgaattcagca 1751
>PTA.sd.10161.C1 nseq=13
Length = 2110
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 aacactgattctcat 205
|||||||||||||||
Sbjct: 2046 aacactgattctcat 2032
>PTA.sd.1015.C1 nseq=9
Length = 1153
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 caaagtgagaatgca 126
|||||||||||||||
Sbjct: 445 caaagtgagaatgca 459
>At5g60180.F
Length = 984
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 ttggggtttggtgca 279
|||||||||||||||
Sbjct: 882 ttggggtttggtgca 896
>At5g60110.F
Length = 984
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 ttggggtttggtgca 279
|||||||||||||||
Sbjct: 882 ttggggtttggtgca 896
>At5g55330.F
Length = 1041
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 gcactgaagaggaag 76
|||||||||||||||
Sbjct: 820 gcactgaagaggaag 834
>At4g29655.F
Length = 573
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 ctcaaaggccatggc 167
|||||||||||||||
Sbjct: 98 ctcaaaggccatggc 112
>At4g29450.F
Length = 2592
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 aagtgagaatgcaga 128
|||||||||||||||
Sbjct: 1992 aagtgagaatgcaga 2006
>At2g31830.F
Length = 3435
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 cagcactgaagagga 74
|||||||||||||||
Sbjct: 2334 cagcactgaagagga 2348
>At1g29010.F
Length = 663
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 aaaggccatggcatt 170
|||||||||||||||
Sbjct: 482 aaaggccatggcatt 496
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)