BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00141
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.458.C1 nseq=8 595 e-170
PTA.sd.1428.C1 nseq=2 38 0.036
At5g07400.F PTA.sd.14351.singlet 32 2.2
At3g27990.F PTA.sd.9509.singlet 32 2.2
PTA.sd.7226.C1 nseq=14 32 2.2
PTA.sd.5596.C1 nseq=33 32 2.2
PTA.sd.4788.C1 nseq=4 32 2.2
PTA.sd.3664.C1 nseq=23 32 2.2
PTA.sd.3022.C1 nseq=5 32 2.2
PTA.sd.2272.C1 nseq=9 32 2.2
PTA.sd.201.C1 nseq=19 32 2.2
PTA.sd.14963.C1 nseq=6 32 2.2
PTA.sd.14812.C1 nseq=2 32 2.2
PTA.sd.14666.C1 nseq=5 32 2.2
PTA.sd.12005.C1 nseq=5 32 2.2
>PTA.sd.458.C1 nseq=8
Length = 2082
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 agaaactgccggaagtgaaactatcgctgaggccatggggagcaaaagaagactcaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 agaaactgccggaagtgaaactatcgctgaggccatggggagcaaaagaagactcaaagc 1541
Query: 61 tctcagaattccaggtggagctgatccaactggcctctcaactcgttggagaccatctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 tctcagaattccaggtggagctgatccaactggcctctcaactcgttggagaccatctcc 1601
Query: 121 taaactcatatccagacattgggaagaacatgacagtaagtgaaggcaacaaatacgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 taaactcatatccagacattgggaagaacatgacagtaagtgaaggcaacaaatacgcag 1661
Query: 181 aagacgctgttcagaagtttctggaagcagggatggctgcactggaagcaggagcagacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 aagacgctgttcagaagtttctggaagcagggatggctgcactggaagcaggagcagacg 1721
Query: 241 aaaacactatagtcactatgaggccgtctctgacaaccaggaccagtcccagtgaaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 aaaacactatagtcactatgaggccgtctctgacaaccaggaccagtcccagtgaaggga 1781
>PTA.sd.1428.C1 nseq=2
Length = 1271
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 73 aggtggagctgatccaact 91
|||||||||||||||||||
Sbjct: 523 aggtggagctgatccaact 505
>At5g07400.F PTA.sd.14351.singlet
Length = 3228
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 273 acaaccaggaccagtc 288
||||||||||||||||
Sbjct: 2810 acaaccaggaccagtc 2825
>At3g27990.F PTA.sd.9509.singlet
Length = 597
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 68 attccaggtggagctg 83
||||||||||||||||
Sbjct: 505 attccaggtggagctg 520
>PTA.sd.7226.C1 nseq=14
Length = 2581
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 tcctaaactcatatcc 133
||||||||||||||||
Sbjct: 851 tcctaaactcatatcc 836
>PTA.sd.5596.C1 nseq=33
Length = 2390
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 aagtgaaggcaacaaa 173
||||||||||||||||
Sbjct: 2077 aagtgaaggcaacaaa 2092
>PTA.sd.4788.C1 nseq=4
Length = 1712
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 236 agacgaaaacactata 251
||||||||||||||||
Sbjct: 670 agacgaaaacactata 685
>PTA.sd.3664.C1 nseq=23
Length = 1417
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 114 catctcctaaactcat 129
||||||||||||||||
Sbjct: 1018 catctcctaaactcat 1003
>PTA.sd.3022.C1 nseq=5
Length = 2486
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 156 gtaagtgaaggcaacaaata 175
||||||||||| ||||||||
Sbjct: 438 gtaagtgaaggaaacaaata 419
>PTA.sd.2272.C1 nseq=9
Length = 1112
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 ttcagaagtttctgga 205
||||||||||||||||
Sbjct: 394 ttcagaagtttctgga 409
>PTA.sd.201.C1 nseq=19
Length = 1374
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 ggagcaaaagaagact 54
||||||||||||||||
Sbjct: 291 ggagcaaaagaagact 306
>PTA.sd.14963.C1 nseq=6
Length = 1492
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 275 aaccaggaccagtccc 290
||||||||||||||||
Sbjct: 250 aaccaggaccagtccc 265
>PTA.sd.14812.C1 nseq=2
Length = 1507
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 194 gaagtttctggaagca 209
||||||||||||||||
Sbjct: 909 gaagtttctggaagca 924
>PTA.sd.14666.C1 nseq=5
Length = 2973
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 186 gctgttcagaagtttctgga 205
|||||| |||||||||||||
Sbjct: 1950 gctgttaagaagtttctgga 1969
>PTA.sd.12005.C1 nseq=5
Length = 2462
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 46 aagaagactcaaagct 61
||||||||||||||||
Sbjct: 1272 aagaagactcaaagct 1287
>PTA.sd.11216.C1 nseq=14
Length = 2627
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 agaattccaggtggag 80
||||||||||||||||
Sbjct: 1529 agaattccaggtggag 1544
>At4g18300.F
Length = 2130
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 226 aagcaggagcagacga 241
||||||||||||||||
Sbjct: 2030 aagcaggagcagacga 2045
>At3g20150.F
Length = 3285
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 ggaagaacatgacagt 157
||||||||||||||||
Sbjct: 1692 ggaagaacatgacagt 1707
>At1g17630.F
Length = 2196
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 aagtttctggaagcag 210
||||||||||||||||
Sbjct: 2009 aagtttctggaagcag 2024
>At5g23910.F PTA.sd.15525.singlet
Length = 1998
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 ctctcagaattccag 74
|||||||||||||||
Sbjct: 490 ctctcagaattccag 504
>At1g25160.F PTA.sd.1802.singlet
Length = 3063
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 gcaaaagaagactca 56
|||||||||||||||
Sbjct: 1586 gcaaaagaagactca 1572
>PTA.sd.8348.C1 nseq=10
Length = 1453
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 ccggaagtgaaacta 23
|||||||||||||||
Sbjct: 1111 ccggaagtgaaacta 1097
>PTA.sd.8266.C1 nseq=18
Length = 1990
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 tggggagcaaaagaa 50
|||||||||||||||
Sbjct: 1867 tggggagcaaaagaa 1881
>PTA.sd.7661.C1 nseq=6
Length = 1844
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 agaagtttctggaag 207
|||||||||||||||
Sbjct: 1458 agaagtttctggaag 1472
>PTA.sd.7570.C1 nseq=4
Length = 2413
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 agaagactcaaagct 61
|||||||||||||||
Sbjct: 1773 agaagactcaaagct 1759
>PTA.sd.6674.C1 nseq=14
Length = 1368
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tgttcagaagtttct 202
|||||||||||||||
Sbjct: 598 tgttcagaagtttct 584
>PTA.sd.5796.C1 nseq=9
Length = 1953
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 gatggctgcactgga 226
|||||||||||||||
Sbjct: 1139 gatggctgcactgga 1125
>PTA.sd.3759.C1 nseq=8
Length = 3076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 gtgaaggcaacaaat 174
|||||||||||||||
Sbjct: 1694 gtgaaggcaacaaat 1708
>PTA.sd.3671.C1 nseq=5
Length = 1775
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 tgggaagaacatgac 154
|||||||||||||||
Sbjct: 524 tgggaagaacatgac 538
>PTA.sd.359.C1 nseq=4
Length = 3637
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 cagaagtttctggaa 206
|||||||||||||||
Sbjct: 2889 cagaagtttctggaa 2875
>PTA.sd.3476.C1 nseq=2
Length = 3720
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 ggtggagctgatcca 88
|||||||||||||||
Sbjct: 3167 ggtggagctgatcca 3153
>PTA.sd.3351.C1 nseq=5
Length = 1241
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 aaatacgcagaagac 185
|||||||||||||||
Sbjct: 580 aaatacgcagaagac 594
>PTA.sd.2056.C1 nseq=3
Length = 550
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 cattgggaagaacat 151
|||||||||||||||
Sbjct: 470 cattgggaagaacat 456
>PTA.sd.1805.C1 nseq=2
Length = 3039
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 gcaaaagaagactca 56
|||||||||||||||
Sbjct: 1562 gcaaaagaagactca 1548
>PTA.sd.17464.C1 nseq=13
Length = 713
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 aagtgaaggcaacaa 172
|||||||||||||||
Sbjct: 438 aagtgaaggcaacaa 452
>PTA.sd.17344.C1 nseq=9
Length = 1608
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 acagtaagtgaaggc 167
|||||||||||||||
Sbjct: 221 acagtaagtgaaggc 207
>PTA.sd.16852.C1 nseq=14
Length = 976
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 aagtgaaggcaacaa 172
|||||||||||||||
Sbjct: 621 aagtgaaggcaacaa 607
>PTA.sd.16477.C1 nseq=5
Length = 3202
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 ttgggaagaacatga 153
|||||||||||||||
Sbjct: 3125 ttgggaagaacatga 3111
>PTA.sd.15629.C1 nseq=4
Length = 1461
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 agacgctgttcagaa 196
|||||||||||||||
Sbjct: 1182 agacgctgttcagaa 1196
>PTA.sd.15628.C1 nseq=13
Length = 1666
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 agacgctgttcagaa 196
|||||||||||||||
Sbjct: 1160 agacgctgttcagaa 1174
>PTA.sd.15538.C1 nseq=7
Length = 1292
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 aaaagaagactcaaa 58
|||||||||||||||
Sbjct: 1280 aaaagaagactcaaa 1266
>PTA.sd.14968.C1 nseq=9
Length = 2540
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 agaagactcaaagct 61
|||||||||||||||
Sbjct: 1909 agaagactcaaagct 1895
>PTA.sd.14753.C1 nseq=4
Length = 2604
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 gaagacgctgttcag 194
|||||||||||||||
Sbjct: 1447 gaagacgctgttcag 1433
>PTA.sd.14519.C1 nseq=2
Length = 2805
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 acagtaagtgaaggc 167
|||||||||||||||
Sbjct: 1057 acagtaagtgaaggc 1071
>PTA.sd.14330.C1 nseq=3
Length = 2009
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 220 cactggaagcaggagcaga 238
||||||||||| |||||||
Sbjct: 1561 cactggaagcaagagcaga 1579
>PTA.sd.14166.C1 nseq=2
Length = 1101
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 agaagtttctggaag 207
|||||||||||||||
Sbjct: 348 agaagtttctggaag 334
>PTA.sd.13839.C1 nseq=20
Length = 1672
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 ggcaacaaatacgca 179
|||||||||||||||
Sbjct: 909 ggcaacaaatacgca 923
>At4g14170.F
Length = 1287
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 agaagtttctggaag 207
|||||||||||||||
Sbjct: 1025 agaagtttctggaag 1039
>At4g08050.F
Length = 4287
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 agcaggagcagacga 241
|||||||||||||||
Sbjct: 3993 agcaggagcagacga 4007
>At4g03250.F
Length = 1431
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 tgaggccgtctctga 273
|||||||||||||||
Sbjct: 665 tgaggccgtctctga 651
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)