BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00077
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.5543.C1 nseq=5 595 e-170
At4g38030.F 54 6e-07
At1g65210.F 36 0.14
PTA.sd.13085.C1 nseq=6 34 0.56
PTA.sd.12576.C1 nseq=3 34 0.56
PTA.sd.8902.C1 nseq=27 32 2.2
PTA.sd.8339.C1 nseq=37 32 2.2
PTA.sd.7791.C1 nseq=4 32 2.2
PTA.sd.707.C1 nseq=5 32 2.2
PTA.sd.574.C1 nseq=3 32 2.2
PTA.sd.5178.C1 nseq=10 32 2.2
PTA.sd.3174.C1 nseq=10 32 2.2
PTA.sd.11731.C1 nseq=4 32 2.2
At3g13900.F 32 2.2
At2g27780.F 32 2.2
>PTA.sd.5543.C1 nseq=5
Length = 2135
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aacgatacataccaaccaacaacatggcaaatcatattcaacctaaaaaacgtgaaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 aacgatacataccaaccaacaacatggcaaatcatattcaacctaaaaaacgtgaaccgt 1740
Query: 61 atcggacgctacacactccgaatagctctagcatcagcagctgattcggaactacaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 atcggacgctacacactccgaatagctctagcatcagcagctgattcggaactacaaatc 1800
Query: 121 cgaatcaacgatccgaaatccgatgcgattttcacaaccggttttatcggaaaggacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 cgaatcaacgatccgaaatccgatgcgattttcacaaccggttttatcggaaaggacaat 1860
Query: 181 gcgatcgcaagacatggaattcatggattatatagattgtatagtatcgacgttgctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 gcgatcgcaagacatggaattcatggattatatagattgtatagtatcgacgttgctgga 1920
Query: 241 aatttactaagtgttggtgataatacaatatttttaactcaaaccagaagtagaacacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 aatttactaagtgttggtgataatacaatatttttaactcaaaccagaagtagaacacca 1980
>At4g38030.F
Length = 1950
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 165 tatcggaaaggacaatgcgatcgcaagacatggaattcatgga 207
||||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 1761 tatcggaaaagacaatgctatagcaagacatggaatccatgga 1803
>At1g65210.F
Length = 747
Score = 36.2 bits (18), Expect = 0.14
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 178 aatgcgatcgcaagacatggaattcatgga 207
||||| || |||||||||||||| ||||||
Sbjct: 571 aatgctatagcaagacatggaatccatgga 600
>PTA.sd.13085.C1 nseq=6
Length = 1276
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 116 aaatccgaatcaacgat 132
|||||||||||||||||
Sbjct: 121 aaatccgaatcaacgat 105
>PTA.sd.12576.C1 nseq=3
Length = 2041
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18 aacaacatggcaaatca 34
|||||||||||||||||
Sbjct: 1581 aacaacatggcaaatca 1597
Score = 30.2 bits (15), Expect = 8.7
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 181 gcgatcgcaagacatggaattcatgga 207
||||| ||||||||||| || ||||||
Sbjct: 1753 gcgattgcaagacatgggatacatgga 1779
>PTA.sd.8902.C1 nseq=27
Length = 1860
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 280 caaaccagaagtagaa 295
||||||||||||||||
Sbjct: 1479 caaaccagaagtagaa 1494
>PTA.sd.8339.C1 nseq=37
Length = 1411
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 125 tcaacgatccgaaatc 140
||||||||||||||||
Sbjct: 649 tcaacgatccgaaatc 634
>PTA.sd.7791.C1 nseq=4
Length = 2134
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 146 cgattttcacaaccgg 161
||||||||||||||||
Sbjct: 1613 cgattttcacaaccgg 1598
>PTA.sd.707.C1 nseq=5
Length = 707
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 aattcatggattatat 213
||||||||||||||||
Sbjct: 661 aattcatggattatat 676
>PTA.sd.574.C1 nseq=3
Length = 3133
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 92 catcagcagctgattc 107
||||||||||||||||
Sbjct: 1567 catcagcagctgattc 1552
>PTA.sd.5178.C1 nseq=10
Length = 2301
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 270 atttttaactcaaacc 285
||||||||||||||||
Sbjct: 2060 atttttaactcaaacc 2045
>PTA.sd.3174.C1 nseq=10
Length = 4185
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 158 ccggttttatcggaaa 173
||||||||||||||||
Sbjct: 1519 ccggttttatcggaaa 1504
>PTA.sd.11731.C1 nseq=4
Length = 1095
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 90 agcatcagcagctgat 105
||||||||||||||||
Sbjct: 580 agcatcagcagctgat 595
>At3g13900.F
Length = 3732
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 gttttatcggaaagga 176
||||||||||||||||
Sbjct: 1280 gttttatcggaaagga 1265
>At2g27780.F
Length = 1107
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 20 caacatggcaaatcat 35
||||||||||||||||
Sbjct: 994 caacatggcaaatcat 979
>At1g63910.F
Length = 1113
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 tggaattcatggatta 210
||||||||||||||||
Sbjct: 322 tggaattcatggatta 337
>At4g04880.F PTA.sd.11369.singlet
Length = 1248
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 cgatccgaaatccga 143
|||||||||||||||
Sbjct: 1149 cgatccgaaatccga 1135
>PTA.sd.9373.C1 nseq=7
Length = 3362
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 agcagctgattcgga 110
|||||||||||||||
Sbjct: 2178 agcagctgattcgga 2164
>PTA.sd.9234.C1 nseq=16
Length = 3563
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 135 gaaatccgatgcgattttc 153
||||||||||| |||||||
Sbjct: 219 gaaatccgatgagattttc 201
>PTA.sd.7995.C1 nseq=11
Length = 1533
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 tcagcagctgattcg 108
|||||||||||||||
Sbjct: 359 tcagcagctgattcg 345
>PTA.sd.6172.C1 nseq=6
Length = 1823
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 tagcatcagcagctg 103
|||||||||||||||
Sbjct: 522 tagcatcagcagctg 508
>PTA.sd.5668.C1 nseq=13
Length = 1473
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 actacaaatccgaat 125
|||||||||||||||
Sbjct: 127 actacaaatccgaat 141
>PTA.sd.1795.C1 nseq=5
Length = 509
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 209 tatatagattgtatagtat 227
|||||||||||||| ||||
Sbjct: 363 tatatagattgtattgtat 381
>PTA.sd.17494.C1 nseq=4
Length = 1893
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 aaccggttttatcgg 170
|||||||||||||||
Sbjct: 499 aaccggttttatcgg 485
>PTA.sd.16504.C1 nseq=3
Length = 3614
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 acataccaaccaaca 21
|||||||||||||||
Sbjct: 2162 acataccaaccaaca 2176
>PTA.sd.15352.C1 nseq=16
Length = 804
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 gtgttggtgataata 265
|||||||||||||||
Sbjct: 399 gtgttggtgataata 385
>PTA.sd.15244.C1 nseq=4
Length = 2160
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 agcatcagcagctga 104
|||||||||||||||
Sbjct: 871 agcatcagcagctga 857
>PTA.sd.14989.C1 nseq=4
Length = 1988
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 ttttaactcaaacca 286
|||||||||||||||
Sbjct: 975 ttttaactcaaacca 961
>PTA.sd.1353.C1 nseq=3
Length = 990
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 cgatcgcaagacatg 196
|||||||||||||||
Sbjct: 723 cgatcgcaagacatg 709
>PTA.sd.12097.C1 nseq=16
Length = 1333
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 aaaaaacgtgaaccg 59
|||||||||||||||
Sbjct: 30 aaaaaacgtgaaccg 16
>PTA.sd.11893.C1 nseq=2
Length = 584
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 gattatatagattgt 220
|||||||||||||||
Sbjct: 520 gattatatagattgt 506
>PTA.sd.1153.C1 nseq=11
Length = 4252
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 aagtgttggtgataa 263
|||||||||||||||
Sbjct: 3411 aagtgttggtgataa 3425
>At5g35240.F
Length = 705
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 7 acataccaaccaacaacat 25
|||| ||||||||||||||
Sbjct: 25 acatcccaaccaacaacat 43
>At5g30520.F
Length = 363
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 caacaacatggcaaa 31
|||||||||||||||
Sbjct: 147 caacaacatggcaaa 161
>At5g28780.F
Length = 1014
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 265 acaatatttttaact 279
|||||||||||||||
Sbjct: 965 acaatatttttaact 951
>At5g27110.F
Length = 2076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 atacataccaaccaa 19
|||||||||||||||
Sbjct: 456 atacataccaaccaa 442
>At4g32820.F
Length = 5454
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 tacacactccgaata 84
|||||||||||||||
Sbjct: 1893 tacacactccgaata 1879
>At4g07670.F
Length = 843
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 agcatcagcagctga 104
|||||||||||||||
Sbjct: 411 agcatcagcagctga 397
>At3g29570.F
Length = 984
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 agattgtatagtatc 228
|||||||||||||||
Sbjct: 813 agattgtatagtatc 799
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 agattgtatagtatc 228
|||||||||||||||
Sbjct: 243 agattgtatagtatc 229
>At2g28710.F
Length = 471
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 aacaacatggcaaat 32
|||||||||||||||
Sbjct: 34 aacaacatggcaaat 48
>At1g54240.F
Length = 750
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 cgatgcgattttcac 155
|||||||||||||||
Sbjct: 228 cgatgcgattttcac 242
>At1g44030.F
Length = 1794
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 taactcaaaccagaa 289
|||||||||||||||
Sbjct: 1103 taactcaaaccagaa 1117
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)