BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00053
(299 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68960.F 593 e-169
At5g52930.F 36 0.14
PTA.sd.7673.C1 nseq=6 34 0.56
PTA.sd.10356.C1 nseq=24 34 0.56
At3g19190.F PTA.sd.8864.singlet 32 2.2
PTA.sd.9351.C1 nseq=4 32 2.2
PTA.sd.6996.C1 nseq=2 32 2.2
PTA.sd.604.C1 nseq=7 32 2.2
PTA.sd.2409.C1 nseq=6 32 2.2
PTA.sd.1975.C1 nseq=7 32 2.2
PTA.sd.18005.C1 nseq=36 32 2.2
PTA.sd.17623.C1 nseq=8 32 2.2
PTA.sd.17229.C1 nseq=18 32 2.2
PTA.sd.13016.C1 nseq=10 32 2.2
PTA.sd.12966.C1 nseq=10 32 2.2
>At1g68960.F
Length = 1131
Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 1 accttcactaaccagagacaaatatgaatcccatgttaatgtctctgtctcatcttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 accttcactaaccagagacaaatatgaatcccatgttaatgtctctgtctcatcttcaaa 410
Query: 61 tgaagaagactgtgtggtcgccgtcaagttttacgggtcacgagttagtctttgtcgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgaagaagactgtgtggtcgccgtcaagttttacgggtcacgagttagtctttgtcgacc 470
Query: 121 tggtgactccgagtggactcgcattgacgtgccttgtccatctttccattcttctaccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tggtgactccgagtggactcgcattgacgtgccttgtccatctttccattcttctaccgt 530
Query: 181 catttactcggagagagaccggagattttacttgaacaattgtaaccctgactataccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catttactcggagagagaccggagattttacttgaacaattgtaaccctgactataccgg 590
Query: 241 tccgaccgatttcacaccgaaatccggtttacacactccggttagtggctacaagagat 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tccgaccgatttcacaccgaaatccggtttacacactccggttagtggctacaagagat 649
>At5g52930.F
Length = 1080
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 65 gaagactgtgtggtcgccgtcaagtt 90
||||||||||| ||||| ||||||||
Sbjct: 430 gaagactgtgttgtcgctgtcaagtt 455
>PTA.sd.7673.C1 nseq=6
Length = 3309
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2 ccttcactaaccagaga 18
|||||||||||||||||
Sbjct: 908 ccttcactaaccagaga 924
>PTA.sd.10356.C1 nseq=24
Length = 811
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 189 cggagagagaccggaga 205
|||||||||||||||||
Sbjct: 245 cggagagagaccggaga 229
>At3g19190.F PTA.sd.8864.singlet
Length = 5445
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 tcatcttcaaatgaag 65
||||||||||||||||
Sbjct: 343 tcatcttcaaatgaag 358
>PTA.sd.9351.C1 nseq=4
Length = 2054
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 actaaccagagacaaa 22
||||||||||||||||
Sbjct: 1723 actaaccagagacaaa 1738
>PTA.sd.6996.C1 nseq=2
Length = 1243
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 160 atctttccattcttct 175
||||||||||||||||
Sbjct: 854 atctttccattcttct 839
>PTA.sd.604.C1 nseq=7
Length = 1389
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 cggagattttacttga 215
||||||||||||||||
Sbjct: 998 cggagattttacttga 983
>PTA.sd.2409.C1 nseq=6
Length = 1802
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 tctctgtctcatcttc 57
||||||||||||||||
Sbjct: 178 tctctgtctcatcttc 193
>PTA.sd.1975.C1 nseq=7
Length = 1675
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 tctctgtctcatcttc 57
||||||||||||||||
Sbjct: 1075 tctctgtctcatcttc 1060
>PTA.sd.18005.C1 nseq=36
Length = 1669
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 gtgtggtcgccgtcaa 87
||||||||||||||||
Sbjct: 574 gtgtggtcgccgtcaa 559
>PTA.sd.17623.C1 nseq=8
Length = 1479
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 284 agtggctacaagagat 299
||||||||||||||||
Sbjct: 1169 agtggctacaagagat 1184
>PTA.sd.17229.C1 nseq=18
Length = 1206
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 attgacgtgccttgtc 158
||||||||||||||||
Sbjct: 868 attgacgtgccttgtc 883
>PTA.sd.13016.C1 nseq=10
Length = 504
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 204 gattttacttgaacaa 219
||||||||||||||||
Sbjct: 407 gattttacttgaacaa 392
>PTA.sd.12966.C1 nseq=10
Length = 1222
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 atccggtttacacact 277
||||||||||||||||
Sbjct: 1198 atccggtttacacact 1183
>PTA.sd.1078.C1 nseq=4
Length = 1130
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 49 ctcatcttcaaatgaa 64
||||||||||||||||
Sbjct: 1069 ctcatcttcaaatgaa 1084
>At5g54320.F
Length = 1110
Score = 32.2 bits (16), Expect = 2.2
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 65 gaagactgtgtggtcgccgtcaagtttt 92
||||||||||| || || ||||||||||
Sbjct: 457 gaagactgtgttgtggctgtcaagtttt 484
>At5g05490.F
Length = 1854
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 24 atgaatcccatgttaa 39
||||||||||||||||
Sbjct: 449 atgaatcccatgttaa 464
>At3g10180.F
Length = 1380
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 15 gagacaaatatgaatc 30
||||||||||||||||
Sbjct: 556 gagacaaatatgaatc 571
>At1g55070.F
Length = 1182
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 284 agtggctacaagagat 299
||||||||||||||||
Sbjct: 345 agtggctacaagagat 330
>At5g26160.F PTA.sd.15678.singlet
Length = 1941
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 tcttcaaatgaagaa 67
|||||||||||||||
Sbjct: 892 tcttcaaatgaagaa 906
>At5g20940.F PTA.sd.15345.singlet
Length = 1815
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 cctggtgactccgag 133
|||||||||||||||
Sbjct: 438 cctggtgactccgag 424
>PTA.sd.9790.C1 nseq=11
Length = 1333
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 ttacttgaacaattg 222
|||||||||||||||
Sbjct: 549 ttacttgaacaattg 563
>PTA.sd.9501.C1 nseq=2
Length = 3534
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cttgtccatctttcc 167
|||||||||||||||
Sbjct: 3076 cttgtccatctttcc 3062
>PTA.sd.9445.C1 nseq=25
Length = 862
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 agaccggagatttta 210
|||||||||||||||
Sbjct: 639 agaccggagatttta 625
>PTA.sd.9278.C1 nseq=2
Length = 5747
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 ctgtctcatcttcaa 59
|||||||||||||||
Sbjct: 1258 ctgtctcatcttcaa 1244
>PTA.sd.9277.C1 nseq=2
Length = 5527
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 ctgtctcatcttcaa 59
|||||||||||||||
Sbjct: 1258 ctgtctcatcttcaa 1244
>PTA.sd.7747.C1 nseq=8
Length = 1703
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 ttaatgtctctgtct 50
|||||||||||||||
Sbjct: 15 ttaatgtctctgtct 29
>PTA.sd.5014.C1 nseq=4
Length = 1016
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gccttgtccatcttt 165
|||||||||||||||
Sbjct: 967 gccttgtccatcttt 981
>PTA.sd.4693.C1 nseq=4
Length = 860
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gtctctgtctcatct 55
|||||||||||||||
Sbjct: 520 gtctctgtctcatct 506
>PTA.sd.191.C1 nseq=14
Length = 1413
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 tgttaatgtctctgt 48
|||||||||||||||
Sbjct: 408 tgttaatgtctctgt 422
>PTA.sd.16779.C1 nseq=4
Length = 1245
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 ctgtctcatcttcaa 59
|||||||||||||||
Sbjct: 130 ctgtctcatcttcaa 116
>PTA.sd.15554.C1 nseq=5
Length = 649
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 ccggagattttactt 213
|||||||||||||||
Sbjct: 476 ccggagattttactt 462
>PTA.sd.15164.C1 nseq=17
Length = 1470
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tcaaatgaagaagac 70
|||||||||||||||
Sbjct: 1317 tcaaatgaagaagac 1303
>PTA.sd.14450.C1 nseq=17
Length = 1435
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 ttcaaatgaagaaga 69
|||||||||||||||
Sbjct: 1096 ttcaaatgaagaaga 1110
>PTA.sd.13677.C1 nseq=3
Length = 1142
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 151 gccttgtccatcttt 165
|||||||||||||||
Sbjct: 479 gccttgtccatcttt 465
>PTA.sd.13320.C1 nseq=15
Length = 2128
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tttacttgaacaatt 221
|||||||||||||||
Sbjct: 391 tttacttgaacaatt 405
>PTA.sd.123.C2 nseq=18
Length = 2480
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 aatatgaatcccatg 35
|||||||||||||||
Sbjct: 2336 aatatgaatcccatg 2322
>PTA.sd.1118.C1 nseq=11
Length = 4887
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 tcttcaaatgaagaa 67
|||||||||||||||
Sbjct: 547 tcttcaaatgaagaa 533
>PTA.sd.11084.C1 nseq=4
Length = 1357
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 cggagagagaccgga 203
|||||||||||||||
Sbjct: 274 cggagagagaccgga 288
>PTA.sd.10352.C1 nseq=10
Length = 1223
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 catctttccattctt 173
|||||||||||||||
Sbjct: 753 catctttccattctt 739
>PTA.sd.10311.C1 nseq=13
Length = 1396
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 tctttccattcttct 175
|||||||||||||||
Sbjct: 1078 tctttccattcttct 1064
>PTA.sd.10050.C1 nseq=20
Length = 6837
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 tgaatcccatgttaa 39
|||||||||||||||
Sbjct: 5429 tgaatcccatgttaa 5443
>At5g55520.F
Length = 2409
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 ctctgtctcatcttc 57
|||||||||||||||
Sbjct: 1380 ctctgtctcatcttc 1366
>At4g03460.F
Length = 1914
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 tagtggctacaagag 297
|||||||||||||||
Sbjct: 1456 tagtggctacaagag 1442
>At3g58770.F
Length = 2316
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 agagaccggagattt 208
|||||||||||||||
Sbjct: 186 agagaccggagattt 172
>At2g03210.F
Length = 1620
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 gtctctgtctcatct 55
|||||||||||||||
Sbjct: 708 gtctctgtctcatct 722
>At1g80980.F
Length = 645
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gtctctgtctcatct 55
|||||||||||||||
Sbjct: 469 gtctctgtctcatct 455
>At1g79400.F
Length = 2352
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 32 catgttaatgtctctgtct 50
||||| |||||||||||||
Sbjct: 2332 catgtgaatgtctctgtct 2314
>At1g52330.F
Length = 645
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 ttcttctaccgtcat 183
|||||||||||||||
Sbjct: 15 ttcttctaccgtcat 1
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 299
length of database: 39,126,732
effective HSP length: 16
effective length of query: 283
effective length of database: 38,700,540
effective search space: 10952252820
effective search space used: 10952252820
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)