BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 24267.f
         (547 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||F86196  hypothetical protein [imported] - Arabidopsis t...   181   5e-45
gb|AAM64419.1|  unknown [Arabidopsis thaliana]                    107   9e-23
gb|AAM65681.1|  unknown [Arabidopsis thaliana]                     82   4e-15
ref|NP_180692.1|  unknown protein; protein id: At2g31340.1 [...    44   0.001
gb|ZP_00033341.1|  hypothetical protein [Burkholderia fungorum]    33   2.2  

>pir||F86196 hypothetical protein [imported] - Arabidopsis
           thaliana|gi|8810475|gb|AAF80136.1|AC024174_18 Contains
           similarity to glyoxalase II isozyme from Arabidopsis
           thaliana gb|U90927 and is a member of the
           Metallo-beta-lactamase seperfamily PF|00753.  ESTs
           gb|AV519053, gb|AV535897, gb|AV535667, gb|AV556046,
           gb|BE039169, gb|AV525509 come from this gene
          Length = 512

 Score =  181 bits (459), Expect = 5e-45
 Identities = 87/105 (82%), Positives = 88/105 (82%)
 Frame = -1

Query: 406 NKFTYITIIKNPRISGCVSRRRIKCPVSTQPWHLGVPRGMLVQPFGPDPLTGPLCSAWNT 227
           NKFTYITIIKNPRISGCVSRRRIKCPVSTQPWHLGVPRGMLVQPFGPDPLTGPLCSAWNT
Sbjct: 69  NKFTYITIIKNPRISGCVSRRRIKCPVSTQPWHLGVPRGMLVQPFGPDPLTGPLCSAWNT 128

Query: 226 NRISSAAVGNGLIASTCLXXXXXXXXXXXXXXXXTCLFIFLDRTL 92
           NRISSAAVGNGLIASTCL                TCLFIFLD+ L
Sbjct: 129 NRISSAAVGNGLIASTCLTSKNTTKKATNITKIITCLFIFLDQLL 173




 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 32/45 (71%), Positives = 33/45 (73%)
 Frame = +3

Query: 177 QVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNIPRGTPRC 311
           QVEA RP   A  EIRFVFQ LQRG V GSGPNGCTNIP G+  C
Sbjct: 23  QVEAARPLQ-ADSEIRFVFQLLQRGQVIGSGPNGCTNIPGGSGTC 66



>gb|AAM64419.1| unknown [Arabidopsis thaliana]
          Length = 69

 Score =  107 bits (267), Expect = 9e-23
 Identities = 52/69 (75%), Positives = 52/69 (75%)
 Frame = +3

Query: 111 MKRQXXXXXXXXXXXXXXXXXKQVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNI 290
           MKRQ                 KQVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNI
Sbjct: 1   MKRQVMIFVMLVAFFVVFLDVKQVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNI 60

Query: 291 PRGTPRCHG 317
           PRGTPRCHG
Sbjct: 61  PRGTPRCHG 69



>gb|AAM65681.1| unknown [Arabidopsis thaliana]
          Length = 70

 Score = 82.0 bits (201), Expect = 4e-15
 Identities = 37/46 (80%), Positives = 39/46 (84%)
 Frame = +3

Query: 177 QVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNIPRGTPRCH 314
           QVEAMRPFP   DEIR +FQALQRGPV GSG NGCTNIPRG+ RCH
Sbjct: 24  QVEAMRPFPDPVDEIRLLFQALQRGPVRGSGRNGCTNIPRGSGRCH 69



>ref|NP_180692.1| unknown protein; protein id: At2g31340.1 [Arabidopsis
           thaliana]|gi|25370756|pir||E84719 hypothetical protein
           At2g31340 [imported] - Arabidopsis
           thaliana|gi|4589966|gb|AAD26484.1| unknown protein
           [Arabidopsis thaliana]|gi|20197893|gb|AAM15304.1|
           unknown protein [Arabidopsis thaliana]
          Length = 258

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = -3

Query: 257 DWTPLQCLEHEPDLIGSCWERPHCFNLLDVQEYNKKGN 144
           D + LQ L+ +PDLI   WERPH FNL  VQE N+  N
Sbjct: 221 DRSSLQRLKQKPDLIYGIWERPHGFNLRSVQENNEHNN 258



>gb|ZP_00033341.1| hypothetical protein [Burkholderia fungorum]
          Length = 641

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 25/79 (31%), Positives = 31/79 (38%), Gaps = 14/79 (17%)
 Frame = -1

Query: 373 PRISGCVSRRRIKCPVSTQPWHLGVPRGMLVQ------PFGPDP--------LTGPLCSA 236
           PR   C+   R   PV +QP   G P GM +Q      PF P P        +  PL   
Sbjct: 26  PRAPSCILHYRFAPPVKSQPAPAGNPSGMKIQETRMNRPFKPYPFSPRHHEGVAPPLVDG 85

Query: 235 WNTNRISSAAVGNGLIAST 179
            +  R   A VG G +  T
Sbjct: 86  RDPLRRPVAIVGGGPVGMT 104



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 18163084566
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)