BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g22130.f
(501 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_238128.1| hypothetical protein XP_238128 [Rattus nor... 40 0.014
emb|CAA89684.1| ORF YJR151c [Saccharomyces cerevisiae]|gi|1... 40 0.014
dbj|BAA20037.1| membrane glycoprotein [Equine herpesvirus 1... 37 0.12
ref|XP_231714.1| similar to Maltase-glucoamylase, intestina... 36 0.20
gb|AAK61484.1| glycoprotein gp2 [Equine herpesvirus 1] 36 0.27
>ref|XP_238128.1| hypothetical protein XP_238128 [Rattus norvegicus]
Length = 102
Score = 40.0 bits (92), Expect = 0.014
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 9 WSWCWWCNDGWSWRWRCYDGWGWCWW 86
W WCW W W W W WCWW
Sbjct: 42 WCWCWCWCWCWCWCWCWCWCWCWCWW 67
Score = 39.7 bits (91), Expect = 0.018
Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 4/35 (11%)
Frame = +3
Query: 9 WSWCW-WCNDGWSWRWRCYDGWGWCW---WSYDGW 101
W WCW WC W W W C+ W WCW W + W
Sbjct: 38 WCWCWCWC---WCWCW-CWC-WCWCWCWCWCWCWW 67
>emb|CAA89684.1| ORF YJR151c [Saccharomyces cerevisiae]|gi|1078284|pir||S57180
probable membrane protein YJR151c - yeast (Saccharomyces
cerevisiae)|gi|6322611|ref|NP_012685.1| Delayed
Anaerobic Gene; Dan4p [Saccharomyces
cerevisiae]|gi|1352944|sp|P47179|DAN4_YEAST Cell wall
protein DAN4 precursor
Length = 1161
Score = 40.0 bits (92), Expect = 0.014
Identities = 24/103 (23%), Positives = 41/103 (39%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNA 136
TTP + +T +S P TS ++ T T+ ++ + TTP ++ T PTT+T +
Sbjct: 136 TTPTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTS 195
Query: 135 DSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+ + +T TT+T ST
Sbjct: 196 TTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTST 238
Score = 36.6 bits (83), Expect = 0.16
Identities = 26/102 (25%), Positives = 41/102 (39%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNA 136
TT + T +S P TS T+P + TS +S S TTP +S T PTT+T
Sbjct: 208 TTSTTSTTPTTSTTSTTPTTS--TTPTTSTTSTTSQTSTKS-TTPTTSSTSTTPTTSTTP 264
Query: 135 DSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNS 10
+++ +TA ++T++ S
Sbjct: 265 TTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSSAS 306
Score = 35.8 bits (81), Expect = 0.27
Identities = 23/107 (21%), Positives = 39/107 (35%)
Frame = -1
Query: 327 THRQTTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTT 148
T TT + T +S P TS ++ T T+ ++ + TTP ++ T PTT
Sbjct: 141 TITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT 200
Query: 147 NTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+T + + + +T T+T ST
Sbjct: 201 STTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKST 247
Score = 35.8 bits (81), Expect = 0.27
Identities = 22/103 (21%), Positives = 39/103 (37%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNA 136
TT + T +S P TS ++ T T+ ++ + TTP ++ T PTT+T +
Sbjct: 154 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTS 213
Query: 135 DSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+ + +T TT++ ST
Sbjct: 214 TTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTST 256
Score = 35.4 bits (80), Expect = 0.35
Identities = 22/103 (21%), Positives = 38/103 (36%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNA 136
TT + T +S P TS ++ T T+ ++ + TTP ++ T PTT+T +
Sbjct: 163 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTS 222
Query: 135 DSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+ + +T TT+T T
Sbjct: 223 TTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPT 265
Score = 34.7 bits (78), Expect = 0.59
Identities = 22/107 (20%), Positives = 39/107 (35%)
Frame = -1
Query: 327 THRQTTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTT 148
T TT +T +++ TS ++ T T+ ++ + TTP ++ T PTT
Sbjct: 123 TSTSTTTTKSSTSTTPTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT 182
Query: 147 NTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+T + + + +T TT T ST
Sbjct: 183 STTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTST 229
Score = 34.7 bits (78), Expect = 0.59
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TS-----HQTSPVHT*-TSHDQASSVYSETTPPQASAYTMP 154
TTP + +T +S P TS QTS T T+ +++ + TTP ++ T P
Sbjct: 214 TTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAP 273
Query: 153 TTNTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNT 16
TT+T + +++ +T TT+T
Sbjct: 274 TTSTTSTTSTTSTISTAPTTSTTSSTFSTSSASASSVISTTATTST 319
Score = 34.3 bits (77), Expect = 0.78
Identities = 22/103 (21%), Positives = 38/103 (36%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNA 136
TT + T +S P TS ++ T T+ ++ + TTP ++ T PTT+T
Sbjct: 172 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTP 231
Query: 135 DSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
+++ +T TT+T T
Sbjct: 232 TTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPT 274
>dbj|BAA20037.1| membrane glycoprotein [Equine herpesvirus
1]|gi|11278205|pir||T45462 membrane glycoprotein
[imported] - equine herpesvirus 1
Length = 866
Score = 37.0 bits (84), Expect = 0.12
Identities = 29/108 (26%), Positives = 41/108 (37%)
Frame = -1
Query: 330 ATHRQTTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPT 151
+T TT P+ T ++ P T+ T+ V T S A+S +ETT A+A + PT
Sbjct: 105 STETTTTTPTASTTTPTTTTAAPTTAATTTAVTTAAS--TAASTSAETTTATATATSTPT 162
Query: 150 TNTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
T T ST+ TA TT +T
Sbjct: 163 T-TTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATT 209
Score = 30.8 bits (68), Expect = 8.6
Identities = 30/123 (24%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Frame = -1
Query: 315 TTPPSHRKATNQASSVHP*TSHQTSPVHT--------------------*TSHDQASSVY 196
T+PP+ SS P ++H +SP T TS ++S
Sbjct: 55 TSPPT-------TSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTE 107
Query: 195 SETTPPQASAYTMPTTNTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNT 16
+ TT P AS T PTT T A +T+ T TT
Sbjct: 108 TTTTTPTAST-TTPTTTTAAPTTAATTTAVTTAASTAASTSAETTTATATATSTPTTTTP 166
Query: 15 NST 7
ST
Sbjct: 167 TST 169
>ref|XP_231714.1| similar to Maltase-glucoamylase, intestinal [Rattus norvegicus]
Length = 6819
Score = 36.2 bits (82), Expect = 0.20
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -1
Query: 291 ATNQASSVHP*TSHQ----TSPVHT*TSHDQASSVYSETTPPQASAYTMPTTNTNADSTS 124
AT Q S+V TS T+P +SH S+V+ ETTP A++ + TTNT ST+
Sbjct: 6617 ATPQTSTVDNTTSTTFFGTTTPFPITSSHANTSAVFPETTPTPATSPVVNTTNTTFPSTT 6676
Score = 31.2 bits (69), Expect = 6.6
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Frame = -1
Query: 330 ATHRQTTP-PSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMP 154
A +TTP P+ N ++ P T T+P T +SH S V+ ETT ++ +
Sbjct: 6650 AVFPETTPTPATSPVVNTTNTTFPST---TTPFPTTSSHTNTSDVFPETTTAPETSPVVN 6706
Query: 153 TTNT 142
TNT
Sbjct: 6707 ITNT 6710
>gb|AAK61484.1| glycoprotein gp2 [Equine herpesvirus 1]
Length = 374
Score = 35.8 bits (81), Expect = 0.27
Identities = 28/108 (25%), Positives = 40/108 (36%)
Frame = -1
Query: 330 ATHRQTTPPSHRKATNQASSVHP*TSHQTSPVHT*TSHDQASSVYSETTPPQASAYTMPT 151
+T TT P+ T ++ P T+ T+ V T A+S +ETT A+A + PT
Sbjct: 105 STETTTTTPTASTTTPTTTTAAPTTAATTTAVTT------AASTSAETTTATATATSTPT 158
Query: 150 TNTNADSTSCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXHYTTNTNST 7
T T ST+ TA TT +T
Sbjct: 159 T-TTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATT 205
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 114
effective length of database: 277,869,175
effective search space used: 14449197100
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)