BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01340.f
(2121 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563625.1| cyclic nucleotide-regulated ion channel; p... 1402 0.0
gb|AAF76224.1|AF272002_1 CaM-regulated potassium ion channe... 1258 0.0
ref|NP_192010.2| cyclic nucleotide-regulated ion channel, p... 1118 0.0
pir||T10541 cyclic nucleotide gated channel homolog F3I3.30... 1110 0.0
emb|CAB80910.1| cyclic nucleotide gated channel (CNGC4) lik... 1092 0.0
>ref|NP_563625.1| cyclic nucleotide-regulated ion channel; protein id: At1g01340.1,
supported by cDNA: gi_8515882 [Arabidopsis
thaliana]|gi|9665147|gb|AAF97331.1|AC023628_12 Putative
cyclic nucleotide-regulated ion channel protein
[Arabidopsis thaliana]|gi|25518607|pir||F86143
hypothetical protein F6F3.13 [imported] - Arabidopsis
thaliana
Length = 706
Score = 1402 bits (3629), Expect = 0.0
Identities = 693/706 (98%), Positives = 693/706 (98%)
Frame = +1
Query: 1 MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 180
MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR
Sbjct: 1 MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 60
Query: 181 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 360
KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT
Sbjct: 61 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 120
Query: 361 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 540
LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI
Sbjct: 121 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 180
Query: 541 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 720
VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW
Sbjct: 181 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 240
Query: 721 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC 900
NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC
Sbjct: 241 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC 300
Query: 901 PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF 1080
PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF
Sbjct: 301 PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF 360
Query: 1081 VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR 1260
VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR
Sbjct: 361 VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR 420
Query: 1261 KRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV 1440
KRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV
Sbjct: 421 KRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV 480
Query: 1441 CDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGED 1620
CDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGED
Sbjct: 481 CDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGED 540
Query: 1621 LLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYS 1800
LLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYS
Sbjct: 541 LLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYS 600
Query: 1801 VQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVXXXXXXXXXX 1980
VQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATV
Sbjct: 601 VQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVSSSLSLGGAL 660
Query: 1981 XXXRFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFTANHTTDP 2118
RFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFTANHTTDP
Sbjct: 661 YASRFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFTANHTTDP 706
>gb|AAF76224.1|AF272002_1 CaM-regulated potassium ion channel [Arabidopsis thaliana]
Length = 695
Score = 1258 bits (3254), Expect(2) = 0.0
Identities = 630/644 (97%), Positives = 632/644 (97%), Gaps = 1/644 (0%)
Frame = +1
Query: 1 MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 180
MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR
Sbjct: 1 MILFRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 60
Query: 181 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 360
KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT
Sbjct: 61 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 120
Query: 361 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 540
LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI
Sbjct: 121 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 180
Query: 541 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 720
VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW
Sbjct: 181 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 240
Query: 721 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC 900
NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC
Sbjct: 241 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSC 300
Query: 901 PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF 1080
PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF
Sbjct: 301 PFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKF 360
Query: 1081 VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR 1260
VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR
Sbjct: 361 VGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLR 420
Query: 1261 KRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV 1440
KRIR EQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV
Sbjct: 421 KRIRD-EQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAV 479
Query: 1441 CDRLRPVLYTENSYVIREGDPV-GEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGE 1617
CDRLRPVLYTENSYVIREG G ++ R LVSATTNGGRSGFFNAVNLKASDFCGE
Sbjct: 480 CDRLRPVLYTENSYVIREGRSCWGNVVCYERIDLVSATTNGGRSGFFNAVNLKASDFCGE 539
Query: 1618 DLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFY 1797
DLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFY
Sbjct: 540 DLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFY 599
Query: 1798 SVQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDK 1929
SVQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDK
Sbjct: 600 SVQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDK 643
Score = 106 bits (264), Expect(2) = 0.0
Identities = 51/52 (98%), Positives = 52/52 (99%)
Frame = +3
Query: 1932 TQCCNRVVVLEPWRRSLRVAFRIKRASQSEAQYLQPSSSLHSSFATSKTHRA 2087
TQCCNRVVVLEPWRRSLRVAFRIKRASQSEAQYLQPSSS+HSSFATSKTHRA
Sbjct: 644 TQCCNRVVVLEPWRRSLRVAFRIKRASQSEAQYLQPSSSIHSSFATSKTHRA 695
>ref|NP_192010.2| cyclic nucleotide-regulated ion channel, putative; protein id:
At4g01010.1 [Arabidopsis thaliana]
Length = 696
Score = 1118 bits (2893), Expect = 0.0
Identities = 564/700 (80%), Positives = 609/700 (86%), Gaps = 5/700 (0%)
Frame = +1
Query: 13 RFKD---EGKPLSSEYGYGR-KARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 180
RF+D EG +EYGYGR KARPSL+ V KNV+ G KKPLSF SH +S+ T+
Sbjct: 10 RFRDWISEG----TEYGYGRNKARPSLNTVLKNVRRGLKKPLSFGSHNKKRDSNSSTTTQ 65
Query: 181 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 360
KNIINPQ SFLQNWNKIFLFA V+ALAIDPLFFYIPIVD RHCL L LEIAAS+LRT
Sbjct: 66 KNIINPQGSFLQNWNKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVLRT 125
Query: 361 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 540
IDAFYIIHIVFQFRTAYI+PSSRVFGRGELVDD KAIA+KYLSSYFIIDLLSILPLPQ+
Sbjct: 126 FIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSYFIIDLLSILPLPQL 185
Query: 541 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 720
VVLAVIP+VN+PVSL+TKDYL I QY+PRILR+YPLYTEVTRTSGIVTETAWAGAAW
Sbjct: 186 VVLAVIPNVNKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAW 245
Query: 721 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKT-KGCNMKFLYCENDRNVSNNFLTTS 897
NLSLYMLASHVFGALWYLISVEREDRCW+EACEK + CN +FLYC+ + +V N+FLTTS
Sbjct: 246 NLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYCDGNSSVRNDFLTTS 305
Query: 898 CPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSK 1077
CPF++P DITNST+FNFGIFTDALKSG+VES DFWKKFFYCFWWGLRNLSALGQNL TSK
Sbjct: 306 CPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSK 365
Query: 1078 FVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDL 1257
FVGEIIFA+SICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLP+DL
Sbjct: 366 FVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDL 425
Query: 1258 RKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDA 1437
RKRIRRYEQY+WQETRGVEEE LLRNLPKDLRRDIKRH CLDLLKKVPLFEIMDEQLLDA
Sbjct: 426 RKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDA 485
Query: 1438 VCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGE 1617
VCD+L+PVLYTENSY IREGDPV EMLFVMRG+L+SATTNGGR+GFFNAV LK SDFCGE
Sbjct: 486 VCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGE 545
Query: 1618 DLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFY 1797
DLL WALDPQSSSHFPISTRTVQALTEVEAFAL A+DLK VASQFRRLHSKQLQHTFRFY
Sbjct: 546 DLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQHTFRFY 605
Query: 1798 SVQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVXXXXXXXXX 1977
SVQWRTW SFIQAAWRR+CRRKLA+SL +EEDR R A+ +E NAA+
Sbjct: 606 SVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAITK--RERNAAS---SSSLVAT 660
Query: 1978 XXXXRFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFT 2097
RFASNAL NLR N LPLLP KP+EPDF+
Sbjct: 661 LYASRFASNALRNLRTN--------NLPLLPPKPSEPDFS 692
>pir||T10541 cyclic nucleotide gated channel homolog F3I3.30 - Arabidopsis
thaliana
Length = 698
Score = 1110 bits (2871), Expect = 0.0
Identities = 556/689 (80%), Positives = 601/689 (86%), Gaps = 2/689 (0%)
Frame = +1
Query: 37 LSSEYGYGRK-ARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTRKNIINPQDSFL 213
L SE G+ R+ RPSL+ V KNV+ G KKPLSF SH +S+ T+KNIINPQ SFL
Sbjct: 19 LGSEIGFQREQTRPSLNTVLKNVRRGLKKPLSFGSHNKKRDSNSSTTTQKNIINPQGSFL 78
Query: 214 QNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIV 393
QNWNKIFLFA V+ALAIDPLFFYIPIVD RHCL L LEIAAS+LRT IDAFYIIHIV
Sbjct: 79 QNWNKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIV 138
Query: 394 FQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQIVVLAVIPSVNQ 573
FQFRTAYI+PSSRVFGRGELVDD KAIA+KYLSSYFIIDLLSILPLPQ+VVLAVIP+VN+
Sbjct: 139 FQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSYFIIDLLSILPLPQLVVLAVIPNVNK 198
Query: 574 PVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHV 753
PVSL+TKDYL I QY+PRILR+YPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHV
Sbjct: 199 PVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHV 258
Query: 754 FGALWYLISVEREDRCWQEACEKT-KGCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITN 930
FGALWYLISVEREDRCW+EACEK + CN +FLYC+ + +V N+FLTTSCPF++P DITN
Sbjct: 259 FGALWYLISVEREDRCWREACEKIPEVCNFRFLYCDGNSSVRNDFLTTSCPFINPDDITN 318
Query: 931 STIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISI 1110
ST+FNFGIFTDALKSG+VES DFWKKFFYCFWWGLRNLSALGQNL TSKFVGEIIFA+SI
Sbjct: 319 STVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSI 378
Query: 1111 CISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYR 1290
CISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLP+DLRKRIRRYEQY+
Sbjct: 379 CISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYK 438
Query: 1291 WQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYT 1470
WQETRGVEEE LLRNLPKDLRRDIKRH CLDLLKKVPLFEIMDEQLLDAVCD+L+PVLYT
Sbjct: 439 WQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYT 498
Query: 1471 ENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQS 1650
ENSY IREGDPV EMLFVMRG+L+SATTNGGR+GFFNAV LK SDFCGEDLL WALDPQS
Sbjct: 499 ENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQS 558
Query: 1651 SSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYSVQWRTWSVSF 1830
SSHFPISTRTVQALTEVEAFAL A+DLK VASQFRRLHSKQLQHTFRFYSVQWRTW SF
Sbjct: 559 SSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQHTFRFYSVQWRTWGASF 618
Query: 1831 IQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVXXXXXXXXXXXXXRFASNAL 2010
IQAAWRR+CRRKLA+SL +EEDR R A+ +E NAA+ RFASNAL
Sbjct: 619 IQAAWRRHCRRKLARSLTEEEDRFRNAITK--RERNAAS---SSSLVATLYASRFASNAL 673
Query: 2011 HNLRHNISNLPPRYTLPLLPQKPTEPDFT 2097
NLR N LPLLP KP+EPDF+
Sbjct: 674 RNLRTN--------NLPLLPPKPSEPDFS 694
>emb|CAB80910.1| cyclic nucleotide gated channel (CNGC4) like protein [Arabidopsis
thaliana]|gi|7228242|emb|CAB45784.2| cyclic nucleotide
gated channel (CNGC4) like protein [Arabidopsis
thaliana]|gi|25407074|pir||D85013 hypothetical protein
AT4g01010 [imported] - Arabidopsis thaliana
Length = 689
Score = 1092 bits (2823), Expect = 0.0
Identities = 556/700 (79%), Positives = 601/700 (85%), Gaps = 5/700 (0%)
Frame = +1
Query: 13 RFKD---EGKPLSSEYGYGR-KARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 180
RF+D EG +EYGYGR KARPSL+ V KNV+ G KKPLSF SH +S+ T+
Sbjct: 10 RFRDWISEG----TEYGYGRNKARPSLNTVLKNVRRGLKKPLSFGSHNKKRDSNSSTTTQ 65
Query: 181 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRT 360
KNIINPQ SFLQNWNKIFLFA V+ALAIDPLFFYIPIVD RHCL L LEIAAS+LRT
Sbjct: 66 KNIINPQGSFLQNWNKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVLRT 125
Query: 361 LIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLLSILPLPQI 540
IDAFYIIHIVFQFRTAYI+PSSRVFGRGELVDD KAIA+KYLSSYFIIDLLSILPLPQ+
Sbjct: 126 FIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSYFIIDLLSILPLPQL 185
Query: 541 VVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAW 720
VVLAVIP+VN+PVSL+TKDYL I QY+PRILR+YPLYTEVTRTSGIVTETAWAGAAW
Sbjct: 186 VVLAVIPNVNKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAW 245
Query: 721 NLSLYMLASHVFGALWYLISVEREDRCWQEACEKT-KGCNMKFLYCENDRNVSNNFLTTS 897
NLSLYMLASHVFGALWYLISVEREDRCW+EACEK + CN +FLYC+ + +V N+FLTTS
Sbjct: 246 NLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYCDGNSSVRNDFLTTS 305
Query: 898 CPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSK 1077
CPF++P DITNST+FNFGIFTDALKSG+VES DFWKKFFYCF ALGQNL TSK
Sbjct: 306 CPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCF-------CALGQNLNTSK 358
Query: 1078 FVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDL 1257
FVGEIIFA+SICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLP+DL
Sbjct: 359 FVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDL 418
Query: 1258 RKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDA 1437
RKRIRRYEQY+WQETRGVEEE LLRNLPKDLRRDIKRH CLDLLKKVPLFEIMDEQLLDA
Sbjct: 419 RKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDA 478
Query: 1438 VCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGE 1617
VCD+L+PVLYTENSY IREGDPV EMLFVMRG+L+SATTNGGR+GFFNAV LK SDFCGE
Sbjct: 479 VCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGE 538
Query: 1618 DLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFY 1797
DLL WALDPQSSSHFPISTRTVQALTEVEAFAL A+DLK VASQFRRLHSKQLQHTFRFY
Sbjct: 539 DLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQHTFRFY 598
Query: 1798 SVQWRTWSVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVXXXXXXXXX 1977
SVQWRTW SFIQAAWRR+CRRKLA+SL +EEDR R A+ +E NAA+
Sbjct: 599 SVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAITK--RERNAAS---SSSLVAT 653
Query: 1978 XXXXRFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFT 2097
RFASNAL NLR N LPLLP KP+EPDF+
Sbjct: 654 LYASRFASNALRNLRTN--------NLPLLPPKPSEPDFS 685
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 130
effective length of database: 256,305,767
effective search space used: 147632121792
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)