BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.5.C1
(1272 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171616.1| chloroplast RNA-binding protein cp33, puta... 265 e-123
gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana] 224 e-100
pir||S49463 RNA-binding protein RNP1 precursor - kidney bea... 79 2e-20
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast ... 74 5e-20
pir||S77714 RNA-binding protein precursor, 33K - wood tobac... 74 9e-20
>ref|NP_171616.1| chloroplast RNA-binding protein cp33, putative; protein id:
At1g01080.1, supported by cDNA: 21739., supported by
cDNA: gi_16930400 [Arabidopsis
thaliana]|gi|16930401|gb|AAL31886.1|AF419554_1
At1g01080/T25K16_7 [Arabidopsis
thaliana]|gi|21554268|gb|AAM63343.1| ribonucleoprotein,
putative [Arabidopsis
thaliana]|gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
[Arabidopsis thaliana]
Length = 293
Score = 265 bits (678), Expect(2) = e-123
Identities = 131/131 (100%), Positives = 131/131 (100%)
Frame = +3
Query: 681 KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWF 860
KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWF
Sbjct: 163 KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWF 222
Query: 861 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRI 1040
TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRI
Sbjct: 223 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRI 282
Query: 1041 IVREGIEKSES 1073
IVREGIEKSES
Sbjct: 283 IVREGIEKSES 293
Score = 200 bits (509), Expect(2) = e-123
Identities = 106/163 (65%), Positives = 107/163 (65%)
Frame = +2
Query: 194 MAASCFAIPLSSSSRSSHNAIPXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXRPFVA 373
MAASCFAIPLSSSSRSSHNAIP Q RPFVA
Sbjct: 1 MAASCFAIPLSSSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSRPFVA 60
Query: 374 QPLQIXXXXXXXXXXXXXXXXXXXXXXXXPNKDSVVSKAEPVKKPRPCELYVCNIPRSYD 553
QPLQI PNKDSVVSKAEPVKKPRPCELYVCNIPRSYD
Sbjct: 61 QPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYD 120
Query: 554 IAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAQ 682
IAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSA+
Sbjct: 121 IAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAK 163
Score = 38.9 bits (89), Expect = 0.17
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 831 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS-GEERDAALS 1007
++YV N+P L + F FGT++S V + +TG +R +++ S + A S
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 1008 FNGTQYEGRRIIVREGIE 1061
+GT+ GR + VR ++
Sbjct: 169 LDGTEVGGREMRVRYSVD 186
>gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 224 bits (570), Expect(3) = e-100
Identities = 113/122 (92%), Positives = 113/122 (92%), Gaps = 9/122 (7%)
Frame = +3
Query: 681 KIAIASLDGT---------EVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK 833
KIAIASLDGT EVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK
Sbjct: 520 KIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK 579
Query: 834 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 1013
VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN
Sbjct: 580 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 639
Query: 1014 GT 1019
GT
Sbjct: 640 GT 641
Score = 149 bits (376), Expect(3) = e-100
Identities = 78/105 (74%), Positives = 80/105 (75%), Gaps = 1/105 (0%)
Frame = +2
Query: 371 AQPLQIXXXXXXXXXXXXXXXXXXXXXXXXPNKDSVVSKAEPVKKPRPCELYVCNIPRSY 550
+QPLQI PNKDSVVSKAEPVKKPRPCELYVCNIPRSY
Sbjct: 416 SQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSY 475
Query: 551 DIAQLLDMFQPFGTVISVE-VSRNPQTGESRGSGYVTMGSINSAQ 682
DIAQLLDMFQPFGTVISVE VSRNPQTGESRGSGYVTMGSINSA+
Sbjct: 476 DIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAK 520
Score = 38.1 bits (87), Expect(3) = e-100
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +1
Query: 1003 YHSMEHNMXXXXXXXXXXXXXXXXXPTVLLLLQRHLLDTNNV 1128
++ +NM PTVLLLLQRHLLDTNNV
Sbjct: 638 FNGTVNNMKVAESSSEKVSRRVSRKPTVLLLLQRHLLDTNNV 679
>pir||S49463 RNA-binding protein RNP1 precursor - kidney
bean|gi|558629|emb|CAA57551.1| chloroplast RNA binding
protein [Phaseolus vulgaris]
Length = 287
Score = 78.6 bits (192), Expect(2) = 2e-20
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +3
Query: 690 IASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 869
I +LDG E GR +RV +S P+ K+ L E++HK++VGNL W
Sbjct: 171 IENLDGKEYLGRTLRVNFS--------NKPKA-----KEPLYPETEHKLFVGNLSWSVTN 217
Query: 870 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGR--RI 1040
+ L F ++GT+V RVL+D +TGR+R + F+ F++ EE +AAL + N + EGR R+
Sbjct: 218 EILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMRV 277
Query: 1041 IVREG 1055
+ EG
Sbjct: 278 SLAEG 282
Score = 46.2 bits (108), Expect = 0.001
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 831 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-S 1007
K+Y GNLP+ L +G+ VL+DR TG++R FAF++ + E+ +A + +
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 1008 FNGTQYEGRRIIV 1046
+G +Y GR + V
Sbjct: 174 LDGKEYLGRTLRV 186
Score = 43.5 bits (101), Expect(2) = 2e-20
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +2
Query: 470 DSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSG 649
+ VV++ + + +LY N+P S D A+L + Q +G+ +EV + TG+SRG
Sbjct: 98 EEVVAEQDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFA 157
Query: 650 YVTMGSI 670
+VTM I
Sbjct: 158 FVTMSCI 164
Score = 36.6 bits (83), Expect = 0.84
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 491 EPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 655
EP+ +L+V N+ S L FQ +GTV+ V + +TG SRG G+V
Sbjct: 196 EPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFV 250
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast precursor|gi|100390|pir||S12111
ribonucleoprotein, 33K, precursor - common
tobacco|gi|20005|emb|CAA37879.1| 33 kDa ribonucleoprotein
precursor [Nicotiana tabacum]
Length = 324
Score = 74.3 bits (181), Expect(2) = 5e-20
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Frame = +3
Query: 681 KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLP 854
K AI DG++VGGR ++V + G R EV+++ + +S HK+YV NL
Sbjct: 169 KEAIRLFDGSQVGGRTVKVNFPEVPRGGER---EVMSAKIRSTYQGFVDSPHKLYVANLS 225
Query: 855 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEG 1031
W GLR+ F+ +S +V++DR +GR+R F F++F+S E ++AL + N + EG
Sbjct: 226 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEG 285
Query: 1032 R 1034
R
Sbjct: 286 R 286
Score = 53.5 bits (127), Expect = 7e-06
Identities = 28/73 (38%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Frame = +3
Query: 831 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 1007
++YVGNLP+ L F++ GT+ + +++DR T R+R FAF++ S EE ++A
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 1008 FNGTQYEGRRIIV 1046
F+G+Q GR + V
Sbjct: 175 FDGSQVGGRTVKV 187
Score = 46.6 bits (109), Expect(2) = 5e-20
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 521 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAQ 682
LYV N+P S +QL ++F GTV +VE+ + T SRG +VTMGS+ A+
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAK 169
>pir||S77714 RNA-binding protein precursor, 33K - wood
tobacco|gi|311952|emb|CAA41253.1| 33 kd chloroplast
ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 73.6 bits (179), Expect(2) = 9e-20
Identities = 44/121 (36%), Positives = 69/121 (56%), Gaps = 3/121 (2%)
Frame = +3
Query: 681 KIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLP 854
K AI DG++VGGR ++V + G R EV+++ + +S HK+YV NL
Sbjct: 164 KEAIRLFDGSQVGGRTVKVNFPEVPRGGER---EVMSAKIRSTYQGFVDSPHKLYVANLS 220
Query: 855 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEG 1031
W GLR+ F+ +S +V++DR +GR+R F F++F+S E +AL + N + EG
Sbjct: 221 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEG 280
Query: 1032 R 1034
R
Sbjct: 281 R 281
Score = 53.5 bits (127), Expect = 7e-06
Identities = 28/73 (38%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Frame = +3
Query: 831 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 1007
++YVGNLP+ L F++ GT+ + +++DR T R+R FAF++ S EE ++A
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 1008 FNGTQYEGRRIIV 1046
F+G+Q GR + V
Sbjct: 170 FDGSQVGGRTVKV 182
Score = 46.6 bits (109), Expect(2) = 9e-20
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 521 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAQ 682
LYV N+P S +QL ++F GTV +VE+ + T SRG +VTMGS+ A+
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAK 164
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 126
effective length of database: 260,468,745
effective search space used: 77359217265
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)