BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.4.C1
(1310 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563617.1| expressed protein; protein id: At1g01070.1... 679 0.0
pir||D86141 protein T25K16.7 [imported] - Arabidopsis thali... 625 e-178
ref|NP_172612.1| unknown protein; protein id: At1g11450.1 [... 523 e-147
ref|NP_172613.1| hypothetical protein; protein id: At1g1146... 513 e-144
ref|NP_192052.1| unknown protein; protein id: At4g01430.1, ... 484 e-135
>ref|NP_563617.1| expressed protein; protein id: At1g01070.1, supported by cDNA: 20749.
[Arabidopsis thaliana]
Length = 365
Score = 679 bits (1753), Expect = 0.0
Identities = 349/365 (95%), Positives = 349/365 (95%)
Frame = +2
Query: 68 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 247
MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV
Sbjct: 1 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 60
Query: 248 PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 427
PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT
Sbjct: 61 PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 120
Query: 428 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQIXXXXXXXXXXXXXXX 607
FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQI
Sbjct: 121 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNN 180
Query: 608 XDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 787
DQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL
Sbjct: 181 NDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 240
Query: 788 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 967
YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL
Sbjct: 241 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 300
Query: 968 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND 1147
FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND
Sbjct: 301 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND 360
Query: 1148 SKSPV 1162
SKSPV
Sbjct: 361 SKSPV 365
>pir||D86141 protein T25K16.7 [imported] - Arabidopsis
thaliana|gi|6715646|gb|AAF26473.1|AC007323_14 T25K16.7
[Arabidopsis thaliana]
Length = 344
Score = 625 bits (1613), Expect = e-178
Identities = 328/365 (89%), Positives = 328/365 (89%)
Frame = +2
Query: 68 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 247
MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV
Sbjct: 1 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 60
Query: 248 PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 427
PFAYVLER ASLMQFFFLLGLSYTSATVSCALVSMLPAIT
Sbjct: 61 PFAYVLER---------------------ASLMQFFFLLGLSYTSATVSCALVSMLPAIT 99
Query: 428 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQIXXXXXXXXXXXXXXX 607
FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQI
Sbjct: 100 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNN 159
Query: 608 XDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 787
DQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL
Sbjct: 160 NDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 219
Query: 788 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 967
YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL
Sbjct: 220 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 279
Query: 968 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND 1147
FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND
Sbjct: 280 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND 339
Query: 1148 SKSPV 1162
SKSPV
Sbjct: 340 SKSPV 344
>ref|NP_172612.1| unknown protein; protein id: At1g11450.1 [Arabidopsis thaliana]
Length = 352
Score = 523 bits (1348), Expect = e-147
Identities = 270/352 (76%), Positives = 298/352 (83%), Gaps = 1/352 (0%)
Frame = +2
Query: 68 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 247
M DM+GV+VV K+ P+IVMV S VAMGSVNALVKKALDVGVNHM+IGAYRMAIS+ ILV
Sbjct: 1 MGEDMRGVKVVSKWPPMIVMVTSQVAMGSVNALVKKALDVGVNHMIIGAYRMAISSFILV 60
Query: 248 PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 427
P AY LERK P+ITFRLMVDHF+SGLLGASLMQFF+LLGLSYTSATV+CALVS++PAIT
Sbjct: 61 PIAYFLERKIIPKITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAIT 120
Query: 428 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQIXXXXXXXXXXXXXXX 607
FA ALI RTE +K LKT+AGM+KV+GTLICISGALFLTFYKGP I
Sbjct: 121 FAFALILRTEKIKDLKTQAGMIKVMGTLICISGALFLTFYKGPHISNSHSHLEALPHNNS 180
Query: 608 XDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 787
K NWLLGCLYL IG VLLSLW+LFQGTLSIKYPCK+SSTCLMSIFAAFQCALLSL
Sbjct: 181 DHNTK--NWLLGCLYLVIGIVLLSLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALLSL 238
Query: 788 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 967
YKSRD+ WIIDD FVI VIIYAGV+GQAM+TVA TWGI +LGAVFASA P++LISATL
Sbjct: 239 YKSRDLKHWIIDDGFVIGVIIYAGVIGQAMSTVAATWGINRLGAVFASAIMPVSLISATL 298
Query: 968 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESS-TALSSGMDNEAQ 1120
FDFLILHTPLYLGSVIGS+ TI GLY+FLWGKNKETE+ T LSS M+NE Q
Sbjct: 299 FDFLILHTPLYLGSVIGSVGTIIGLYVFLWGKNKETEADITTLSSRMNNEDQ 350
>ref|NP_172613.1| hypothetical protein; protein id: At1g11460.1 [Arabidopsis thaliana]
Length = 337
Score = 513 bits (1321), Expect = e-144
Identities = 253/338 (74%), Positives = 292/338 (85%)
Frame = +2
Query: 68 MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 247
M DM+ V+V K+ P+IVMV+S VAMGSVNALVKKALDVGVNHM+IGAYR+AIS+ IL
Sbjct: 1 MGEDMRVVKVESKWPPIIVMVISQVAMGSVNALVKKALDVGVNHMIIGAYRIAISSFILA 60
Query: 248 PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 427
P AY+LER+ P+ITFRLMVDHF+SGLLGASLMQFF+LLGLSYTSATV+CALVS++PAIT
Sbjct: 61 PIAYILEREIIPEITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAIT 120
Query: 428 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQIXXXXXXXXXXXXXXX 607
FA ALI RTE +K L+T+AGM+KV+GT+ICISGALFLTFYKGP I
Sbjct: 121 FAFALILRTEKIKSLRTQAGMIKVMGTIICISGALFLTFYKGPHISNSHSHQEALPHNNN 180
Query: 608 XDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSL 787
D + NWLLGCLYLTIGTVL+SLW+LFQGTLSIKYPCK+SSTCLMSIFAAFQCALLSL
Sbjct: 181 SDHN-TKNWLLGCLYLTIGTVLISLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALLSL 239
Query: 788 YKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATL 967
YKSRDV DWIIDDRFVI VI+YAGV+GQAM+TV+ TWG+KKLGAVF SA P+ LISA+L
Sbjct: 240 YKSRDVKDWIIDDRFVIGVIVYAGVIGQAMSTVSVTWGVKKLGAVFVSAIMPIALISASL 299
Query: 968 FDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETES 1081
FDF+ILHTPLYLGS+IGS+ TITGLY+FLWGKNK+ E+
Sbjct: 300 FDFIILHTPLYLGSLIGSVGTITGLYVFLWGKNKDMEA 337
>ref|NP_192052.1| unknown protein; protein id: At4g01430.1, supported by cDNA:
gi_20260641 [Arabidopsis
thaliana]|gi|25407106|pir||F85018 hypothetical protein
AT4g01430 [imported] - Arabidopsis
thaliana|gi|7268186|emb|CAB77713.1| predicted protein of
unknown function [Arabidopsis
thaliana]|gi|20260642|gb|AAM13219.1| unknown protein
[Arabidopsis thaliana]|gi|25083935|gb|AAN72137.1| unknown
protein [Arabidopsis thaliana]
Length = 365
Score = 484 bits (1246), Expect = e-135
Identities = 245/351 (69%), Positives = 293/351 (82%), Gaps = 2/351 (0%)
Frame = +2
Query: 101 EKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERKTR 280
E+++PVIVM++S+VAMGSVNALVKKALDVGVNHM+ GAYRMAISALILVPF+Y+ ERKTR
Sbjct: 5 EQWAPVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTR 64
Query: 281 PQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTEN 460
PQ+TF L+ +HF+SGLLGASLMQFFFLLGLSYTSATVS ALVSMLPAITFALALIFR EN
Sbjct: 65 PQLTFMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIEN 124
Query: 461 VKILKTKAGMLKVIGTLICISGALFLTFYKGPQIXXXXXXXXXXXXXXXXD-QDKANNWL 637
+ LK+KAG+LKV+GTLICI GA+ LTFYKGP++ + D+ WL
Sbjct: 125 AQNLKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQARHNNNNNNGHDQTKKWL 184
Query: 638 LGCLYLTIGTVLLSLWMLFQGTLSIKYP-CKYSSTCLMSIFAAFQCALLSLYKSRDVNDW 814
LGCLYL IGTVLLSLWMLFQG LS KYP KYSSTCLMS+FA+FQCA+LSLYKSRDV DW
Sbjct: 185 LGCLYLVIGTVLLSLWMLFQGKLSFKYPGNKYSSTCLMSVFASFQCAILSLYKSRDVKDW 244
Query: 815 IIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTP 994
II+D+FVI V +YAG+VGQAM+TV T+W IK GAVF S F P++L++ATLFDFLILH+P
Sbjct: 245 IIEDKFVILVTLYAGIVGQAMSTVVTSWSIKMTGAVFVSTFSPVSLVAATLFDFLILHSP 304
Query: 995 LYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDND 1147
LYLGS++GS+VTITGLY+FLWG+ ET+ S + + N +Q+ + NKDN+
Sbjct: 305 LYLGSILGSVVTITGLYVFLWGRKNETDQSVSKTL---NSSQF-SQNKDNE 351
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 126
effective length of database: 260,468,745
effective search space used: 80745310950
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)