BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4145.Contig1
(310 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XI05|PS31_ARATH Proteasome subunit beta type 3-1 (20S ... 36 0.11
gb|AAM62756.1| putative 20S proteasome beta subunit PBC2 [A... 36 0.11
ref|NP_564149.1| 20S proteasome beta subunit C (PBC1); prot... 36 0.11
pir||F96803 hypothetical protein T5M16.3 [imported] - Arabi... 35 0.32
ref|NP_565156.1| 20S proteasome beta subunit C (PBC2); prot... 35 0.32
>sp|Q9XI05|PS31_ARATH Proteasome subunit beta type 3-1 (20S proteasome alpha subunit
C1)|gi|25290059|pir||F86350 hypothetical protein F8K7.15
- Arabidopsis
thaliana|gi|5263324|gb|AAD41426.1|AC007727_15 Identical
to gb|Y13173 Arabidopsis thaliana mRNA for proteasome
subunit. EST gb|T76747 comes from this
gene|gi|12744997|gb|AAK06878.1|AF344327_1 putative 20S
proteasome beta subunit PBC2 [Arabidopsis thaliana]
Length = 204
Score = 36.2 bits (82), Expect = 0.11
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -3
Query: 308 VVTPTEVKERILKGRMD 258
+VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>gb|AAM62756.1| putative 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
Length = 204
Score = 36.2 bits (82), Expect = 0.11
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -3
Query: 308 VVTPTEVKERILKGRMD 258
+VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>ref|NP_564149.1| 20S proteasome beta subunit C (PBC1); protein id: At1g21720.1,
supported by cDNA: 15624., supported by cDNA:
gi_17473524, supported by cDNA: gi_3421106 [Arabidopsis
thaliana]|gi|17473525|gb|AAL38246.1| proteasome subunit
[Arabidopsis thaliana]|gi|21387087|gb|AAM47947.1|
proteasome subunit [Arabidopsis thaliana]
Length = 204
Score = 36.2 bits (82), Expect = 0.11
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = -3
Query: 308 VVTPTEVKERILKGRMD 258
+VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>pir||F96803 hypothetical protein T5M16.3 [imported] - Arabidopsis
thaliana|gi|12323391|gb|AAG51672.1|AC010704_16 putative
20S proteasome beta subunit PBC2; 7006-8626 [Arabidopsis
thaliana]
Length = 191
Score = 34.7 bits (78), Expect = 0.32
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -3
Query: 308 VVTPTEVKERILKGRMD 258
VVTP EVKERILKGRMD
Sbjct: 175 VVTPKEVKERILKGRMD 191
>ref|NP_565156.1| 20S proteasome beta subunit C (PBC2); protein id: At1g77440.1,
supported by cDNA: gi_19548048 [Arabidopsis
thaliana]|gi|17380184|sp|O81153|PS32_ARATH Proteasome
subunit beta type 3-2 (20S proteasome alpha subunit
C2)|gi|25290069|pir||T51981 C 3.4.25.1 proteasome
endopeptidase complex () chain PBC2 [imported] -
Arabidopsis thaliana|gi|3421109|gb|AAC32069.1| 20S
proteasome beta subunit PBC2 [Arabidopsis
thaliana]|gi|14326552|gb|AAK60320.1|AF385730_1
At1g77440/T5M16_3 [Arabidopsis
thaliana]|gi|19548049|gb|AAL87388.1| At1g77440/T5M16_3
[Arabidopsis thaliana]
Length = 204
Score = 34.7 bits (78), Expect = 0.32
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -3
Query: 308 VVTPTEVKERILKGRMD 258
VVTP EVKERILKGRMD
Sbjct: 188 VVTPKEVKERILKGRMD 204
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 78
effective length of database: 324,742,953
effective search space used: 7793830872
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)