BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4145.Contig1
         (310 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XI05|PS31_ARATH  Proteasome subunit beta type 3-1 (20S ...    36   0.11 
gb|AAM62756.1|  putative 20S proteasome beta subunit PBC2 [A...    36   0.11 
ref|NP_564149.1|  20S proteasome beta subunit C (PBC1); prot...    36   0.11 
pir||F96803  hypothetical protein T5M16.3 [imported] - Arabi...    35   0.32 
ref|NP_565156.1|  20S proteasome beta subunit C (PBC2); prot...    35   0.32 
>sp|Q9XI05|PS31_ARATH Proteasome subunit beta type 3-1 (20S proteasome alpha subunit
           C1)|gi|25290059|pir||F86350 hypothetical protein F8K7.15
           - Arabidopsis
           thaliana|gi|5263324|gb|AAD41426.1|AC007727_15 Identical
           to gb|Y13173 Arabidopsis thaliana mRNA for proteasome
           subunit.  EST gb|T76747 comes from this
           gene|gi|12744997|gb|AAK06878.1|AF344327_1 putative 20S
           proteasome beta subunit PBC2 [Arabidopsis thaliana]
          Length = 204

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 15/17 (88%), Positives = 17/17 (99%)
 Frame = -3

Query: 308 VVTPTEVKERILKGRMD 258
           +VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>gb|AAM62756.1| putative 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
          Length = 204

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 15/17 (88%), Positives = 17/17 (99%)
 Frame = -3

Query: 308 VVTPTEVKERILKGRMD 258
           +VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>ref|NP_564149.1| 20S proteasome beta subunit C (PBC1); protein id: At1g21720.1,
           supported by cDNA: 15624., supported by cDNA:
           gi_17473524, supported by cDNA: gi_3421106 [Arabidopsis
           thaliana]|gi|17473525|gb|AAL38246.1| proteasome subunit
           [Arabidopsis thaliana]|gi|21387087|gb|AAM47947.1|
           proteasome subunit [Arabidopsis thaliana]
          Length = 204

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 15/17 (88%), Positives = 17/17 (99%)
 Frame = -3

Query: 308 VVTPTEVKERILKGRMD 258
           +VTPTE+KERILKGRMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>pir||F96803 hypothetical protein T5M16.3 [imported] - Arabidopsis
           thaliana|gi|12323391|gb|AAG51672.1|AC010704_16 putative
           20S proteasome beta subunit PBC2; 7006-8626 [Arabidopsis
           thaliana]
          Length = 191

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -3

Query: 308 VVTPTEVKERILKGRMD 258
           VVTP EVKERILKGRMD
Sbjct: 175 VVTPKEVKERILKGRMD 191
>ref|NP_565156.1| 20S proteasome beta subunit C (PBC2); protein id: At1g77440.1,
           supported by cDNA: gi_19548048 [Arabidopsis
           thaliana]|gi|17380184|sp|O81153|PS32_ARATH Proteasome
           subunit beta type 3-2 (20S proteasome alpha subunit
           C2)|gi|25290069|pir||T51981 C 3.4.25.1 proteasome
           endopeptidase complex () chain PBC2 [imported] -
           Arabidopsis thaliana|gi|3421109|gb|AAC32069.1| 20S
           proteasome beta subunit PBC2 [Arabidopsis
           thaliana]|gi|14326552|gb|AAK60320.1|AF385730_1
           At1g77440/T5M16_3 [Arabidopsis
           thaliana]|gi|19548049|gb|AAL87388.1| At1g77440/T5M16_3
           [Arabidopsis thaliana]
          Length = 204

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -3

Query: 308 VVTPTEVKERILKGRMD 258
           VVTP EVKERILKGRMD
Sbjct: 188 VVTPKEVKERILKGRMD 204
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 78
effective length of database: 324,742,953
effective search space used: 7793830872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results