BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4144.Contig1
(303 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB27810.1| unnamed protein product [Mus musculus] 32 2.1
ref|NP_068686.1| centromere autoantigen H; RIKEN cDNA 28100... 32 2.1
gb|AAH25084.1| centromere autoantigen H [Mus musculus] 32 2.1
dbj|BAB27505.1| unnamed protein product [Mus musculus] 32 2.1
ref|NP_705510.1| hypothetical protein [Plasmodium falciparu... 30 6.1
>dbj|BAB27810.1| unnamed protein product [Mus musculus]
Length = 199
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 6/46 (13%)
Frame = -2
Query: 170 SEEMEMKMFSIKKRR------SRIKNLYITFQKAKRKQRKEKLENN 51
S E+E K+ ++K+R SR K L I +K K+K+ +K+EN+
Sbjct: 141 SSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENS 186
>ref|NP_068686.1| centromere autoantigen H; RIKEN cDNA 2810046K12 gene [Mus
musculus]|gi|6630607|dbj|BAA88520.1| ENP [Mus musculus]
Length = 241
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 6/46 (13%)
Frame = -2
Query: 170 SEEMEMKMFSIKKRR------SRIKNLYITFQKAKRKQRKEKLENN 51
S E+E K+ ++K+R SR K L I +K K+K+ +K+EN+
Sbjct: 141 SSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENS 186
>gb|AAH25084.1| centromere autoantigen H [Mus musculus]
Length = 241
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 6/46 (13%)
Frame = -2
Query: 170 SEEMEMKMFSIKKRR------SRIKNLYITFQKAKRKQRKEKLENN 51
S E+E K+ ++K+R SR K L I +K K+K+ +K+EN+
Sbjct: 141 SSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENS 186
>dbj|BAB27505.1| unnamed protein product [Mus musculus]
Length = 217
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 6/46 (13%)
Frame = -2
Query: 170 SEEMEMKMFSIKKRR------SRIKNLYITFQKAKRKQRKEKLENN 51
S E+E K+ ++K+R SR K L I +K K+K+ +K+EN+
Sbjct: 141 SSELEKKLLDVRKKRLQLKQASRSKLLEIQIEKNKQKEDVDKMENS 186
>ref|NP_705510.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23615755|emb|CAD52747.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2020
Score = 30.4 bits (67), Expect = 6.1
Identities = 14/47 (29%), Positives = 27/47 (56%)
Frame = -2
Query: 161 MEMKMFSIKKRRSRIKNLYITFQKAKRKQRKEKLENNG*WYNTTYYC 21
+E K S K+ S IKN++ + +K K+ ++ + ++N YN +C
Sbjct: 1436 LENKNISENKKTSNIKNMFDSKKKIKKNKKFKNVQNCRSQYNNNNHC 1482
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 76
effective length of database: 327,421,045
effective search space used: 7858105080
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)