BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4143.Contig1
(368 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86450 F5D14.31 protein - Arabidopsis thaliana|gi|8920... 210 3e-54
ref|NP_174530.1| unknown protein; protein id: At1g32520.1 [... 210 3e-54
dbj|BAC10816.1| hypothetical protein~similar to Arabidopsis... 38 0.027
ref|NP_076092.1| splicing factor proline/glutamine rich (po... 36 0.10
ref|XP_131660.1| splicing factor proline/glutamine rich (po... 36 0.10
>pir||G86450 F5D14.31 protein - Arabidopsis
thaliana|gi|8920629|gb|AAF81351.1|AC007767_31 Contains
similarity to an unknown protein At2g35330 gi|3608154
from Arabidopsis thaliana BAC T32F12 gb|AC005314. It
contains a zinc finger, C3HC4 type (RING finger) domain
PF|00097. ESTs gb|AV536704, gb|Z34749 and gb|Z33834 come
from this gene
Length = 870
Score = 210 bits (535), Expect = 3e-54
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -3
Query: 366 CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA 187
CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA
Sbjct: 769 CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA 828
Query: 186 KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 61
KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY
Sbjct: 829 KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 870
>ref|NP_174530.1| unknown protein; protein id: At1g32520.1 [Arabidopsis thaliana]
Length = 223
Score = 210 bits (535), Expect = 3e-54
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -3
Query: 366 CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA 187
CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA
Sbjct: 122 CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVA 181
Query: 186 KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 61
KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY
Sbjct: 182 KSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 223
>dbj|BAC10816.1| hypothetical protein~similar to Arabidopsis thaliana chromosome1,
At1g09310 [Oryza sativa (japonica cultivar-group)]
Length = 409
Score = 38.1 bits (87), Expect = 0.027
Identities = 26/67 (38%), Positives = 29/67 (42%)
Frame = -3
Query: 354 IVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRVAKSRL 175
+VLPKVGGSGAAL +G GDLR +SR
Sbjct: 335 VVLPKVGGSGAAL----------------------------------TGAGDLRSTRSRF 360
Query: 174 GLSYAKR 154
GLSYAKR
Sbjct: 361 GLSYAKR 367
>ref|NP_076092.1| splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated); DNA segment, Chr 4, ERATO
Doi 314, expressed [Mus
musculus]|gi|25055901|ref|XP_204051.1| splicing factor
proline/glutamine rich (polypyrimidine tract binding
protein associated) [Mus
musculus]|gi|17136071|gb|AAK60397.1| PTB-associated
splicing factor [Mus musculus]
Length = 699
Score = 36.2 bits (82), Expect = 0.10
Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 8/57 (14%)
Frame = +2
Query: 200 SPIPEFVSGPANPPITGAKGGPIRSP--------SAPN*GPPRA*SNSAAPLPPTLG 346
+P P + PANPP TGA GP +P +AP PP S+ + PP G
Sbjct: 120 APPPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTG 176
>ref|XP_131660.1| splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Mus musculus]
Length = 696
Score = 36.2 bits (82), Expect = 0.10
Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 8/57 (14%)
Frame = +2
Query: 200 SPIPEFVSGPANPPITGAKGGPIRSP--------SAPN*GPPRA*SNSAAPLPPTLG 346
+P P + PANPP TGA GP +P +AP PP S+ + PP G
Sbjct: 117 APPPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTG 173
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 98
effective length of database: 297,962,033
effective search space used: 7151088792
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)