BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4141.Contig1
         (328 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568496.1|  putative amino acid aminotransferase; prot...    39   0.022
ref|NP_056560.1|  retinol binding protein 3, interstitial [M...    30   7.7  

>ref|NP_568496.1| putative amino acid aminotransferase; protein id: At5g27410.1,
           supported by cDNA: gi_13605848 [Arabidopsis
           thaliana]|gi|26391648|sp|Q9ASR4|BAL2_ARATH
           Branched-chain amino acid aminotransferase-like protein
           2|gi|13605849|gb|AAK32910.1|AF367323_1
           AT5g27410/F21A20_120 [Arabidopsis
           thaliana]|gi|23308233|gb|AAN18086.1|
           At5g27410/F21A20_120 [Arabidopsis thaliana]
          Length = 559

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   VPIPTYQEVKNLEPCV 50
           VPIPTYQEVKNLEPCV
Sbjct: 544 VPIPTYQEVKNLEPCV 559



>ref|NP_056560.1| retinol binding protein 3, interstitial [Mus
            musculus]|gi|17160877|gb|AAH17610.1| Similar to
            retinol-binding protein 3, interstitial [Mus
            musculus]|gi|27769030|gb|AAH42480.1| similar to retinol
            binding protein 3, interstitial [Mus musculus]
          Length = 1234

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 12/82 (14%)
 Frame = +2

Query: 50   LIVEHEWKKTLHTRKTAVFQR----------KAVVFYVFE*KVRPVLALKLSHIMLLTCC 199
            L+VEH WKK +HT    +  R           A+  Y F+ +  P+L  K+ +    +  
Sbjct: 1060 LLVEHIWKKIVHTDALIIDMRFNLGGPTSSISALCSYFFD-EAPPILLDKIYNRPNDSVS 1118

Query: 200  SLWVNVITVGRK--SKSSQALL 259
             LW +    G +  SK S A+L
Sbjct: 1119 ELWTHTQLTGERYGSKKSVAIL 1140



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 84
effective length of database: 316,708,677
effective search space used: 7601008248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)