BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4140.Contig1
         (440 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_028489.1|  unknown protein; protein id: At2g18680.1 [...   162   6e-40
pir||C84567  hypothetical protein At2g18680 [imported] - Ara...   162   6e-40
ref|NP_028490.1|  expressed protein; protein id: At2g18690.1...   112   1e-24
gb|AAK62630.1|  At2g18690/MSF3.7 [Arabidopsis thaliana]|gi|2...    49   9e-14
gb|ZP_00095823.1|  hypothetical protein [Novosphingobium aro...    36   0.090

>ref|NP_028489.1| unknown protein; protein id: At2g18680.1 [Arabidopsis
           thaliana]|gi|20197433|gb|AAD08937.2| unknown protein
           [Arabidopsis thaliana]
          Length = 249

 Score =  162 bits (411), Expect = 6e-40
 Identities = 87/101 (86%), Positives = 87/101 (86%)
 Frame = -2

Query: 439 LGKAAKIVKGMKPKXXXXXXXXXXXXXXLVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR 260
           LGKAAKIVKGMKPK              LVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR
Sbjct: 149 LGKAAKIVKGMKPKLFLLNLFFGLLSFGLVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR 208

Query: 259 MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP 137
           MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP
Sbjct: 209 MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP 249



>pir||C84567 hypothetical protein At2g18680 [imported] - Arabidopsis thaliana
          Length = 287

 Score =  162 bits (411), Expect = 6e-40
 Identities = 87/101 (86%), Positives = 87/101 (86%)
 Frame = -2

Query: 439 LGKAAKIVKGMKPKXXXXXXXXXXXXXXLVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR 260
           LGKAAKIVKGMKPK              LVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR
Sbjct: 187 LGKAAKIVKGMKPKLFLLNLFFGLLSFGLVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR 246

Query: 259 MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP 137
           MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP
Sbjct: 247 MFQLVTYTVAYFQCKSLQGQDSLRDVEYTKLSSTTLMGGLP 287



>ref|NP_028490.1| expressed protein; protein id: At2g18690.1, supported by cDNA:
           gi_14517479 [Arabidopsis
           thaliana]|gi|25370704|pir||D84567 hypothetical protein
           At2g18690 [imported] - Arabidopsis
           thaliana|gi|4185135|gb|AAD08938.1| expressed protein
           [Arabidopsis thaliana]
          Length = 322

 Score =  112 bits (280), Expect = 1e-24
 Identities = 64/98 (65%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
 Frame = -2

Query: 439 LGKAAKIVKGMKPKXXXXXXXXXXXXXXLVQILRLVDWSSSFSVTLTTGLVLMSSVFVVR 260
           LGKAAKIVKGMK K              L QIL+L++   S +VTLTTG VL+  VF VR
Sbjct: 223 LGKAAKIVKGMKTKLFLLNLFFGLLASGLAQILQLINMGRSLAVTLTTGFVLVCLVFAVR 282

Query: 259 MFQLVTYTVAYFQCKSLQGQD--SLRDVEYTKLSSTTL 152
           MFQLVTYTVAYFQCKSLQG+D  SLRDVEY  LSSTTL
Sbjct: 283 MFQLVTYTVAYFQCKSLQGRDVESLRDVEYMALSSTTL 320



>gb|AAK62630.1| At2g18690/MSF3.7 [Arabidopsis thaliana]|gi|23505851|gb|AAN28785.1|
           At2g18690/MSF3.7 [Arabidopsis thaliana]
          Length = 295

 Score = 48.9 bits (115), Expect(2) = 9e-14
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -1

Query: 278 FGLCGEDVSACDLHRCLFPM 219
           FGLCGEDVSACDLHRC+FPM
Sbjct: 276 FGLCGEDVSACDLHRCIFPM 295




 Score = 47.4 bits (111), Expect(2) = 9e-14
 Identities = 27/53 (50%), Positives = 32/53 (59%)
 Frame = -2

Query: 439 LGKAAKIVKGMKPKXXXXXXXXXXXXXXLVQILRLVDWSSSFSVTLTTGLVLM 281
           LGKAAKIVKGMK K              L QIL+L++   S +VTLTTG VL+
Sbjct: 223 LGKAAKIVKGMKTKLFLLNLFFGLLASGLAQILQLINMGRSLAVTLTTGFVLV 275



>gb|ZP_00095823.1| hypothetical protein [Novosphingobium aromaticivorans]
          Length = 410

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 182 NIPQRVLSLQALTLEISNGVSHKLKHPHHKDR---THKDQTG 298
           N PQ+V +LQAL LE++  V+H+L    H  R   T +D+TG
Sbjct: 365 NNPQKVATLQALGLEVTERVAHQLPSNPHNQRYLDTKRDRTG 406



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 6379798296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)