BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4139.Contig1
         (423 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567488.1|  pore protein homolog; protein id: At4g1616...    69   3e-22
pir||A71428  hypothetical protein - Arabidopsis thaliana|gi|...    69   3e-22
dbj|BAB20636.1|  P0475H04.2 [Oryza sativa (japonica cultivar...    50   7e-09
gb|AAL23749.1|  stress-inducible membrane pore protein [Brom...    50   5e-06
pir||T06471  core protein - garden pea|gi|1370287|emb|CAA979...    37   0.003

>ref|NP_567488.1| pore protein homolog; protein id: At4g16160.1, supported by cDNA:
           5714. [Arabidopsis thaliana]|gi|21593908|gb|AAM65873.1|
           pore protein homolog [Arabidopsis thaliana]
          Length = 176

 Score = 68.9 bits (167), Expect(2) = 3e-22
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = -2

Query: 422 KETLLWGLAAGLYSGITYGMTEVRGGAHDWRN 327
           KE+L WGLAAGLYSGITYGMTEVRGGAHDWRN
Sbjct: 99  KESLQWGLAAGLYSGITYGMTEVRGGAHDWRN 130




 Score = 56.2 bits (134), Expect(2) = 3e-22
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -3

Query: 274 ERTSHEQVVQSALTGAAISTAANLLSSVF 188
           ERTSHEQVVQSALTGAAISTAANLLSSVF
Sbjct: 148 ERTSHEQVVQSALTGAAISTAANLLSSVF 176



>pir||A71428 hypothetical protein - Arabidopsis
           thaliana|gi|2244974|emb|CAB10395.1| pore protein homolog
           [Arabidopsis thaliana]|gi|7268365|emb|CAB78658.1| pore
           protein homolog [Arabidopsis thaliana]
          Length = 160

 Score = 68.9 bits (167), Expect(2) = 3e-22
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = -2

Query: 422 KETLLWGLAAGLYSGITYGMTEVRGGAHDWRN 327
           KE+L WGLAAGLYSGITYGMTEVRGGAHDWRN
Sbjct: 83  KESLQWGLAAGLYSGITYGMTEVRGGAHDWRN 114




 Score = 56.2 bits (134), Expect(2) = 3e-22
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -3

Query: 274 ERTSHEQVVQSALTGAAISTAANLLSSVF 188
           ERTSHEQVVQSALTGAAISTAANLLSSVF
Sbjct: 132 ERTSHEQVVQSALTGAAISTAANLLSSVF 160



>dbj|BAB20636.1| P0475H04.2 [Oryza sativa (japonica
           cultivar-group)]|gi|21104571|dbj|BAB93165.1| B1146F03.20
           [Oryza sativa (japonica cultivar-group)]
          Length = 263

 Score = 50.4 bits (119), Expect(2) = 7e-09
 Identities = 21/32 (65%), Positives = 25/32 (77%)
 Frame = -2

Query: 422 KETLLWGLAAGLYSGITYGMTEVRGGAHDWRN 327
           KE   WGLAAG+YSG+TYG+ E R G HDW+N
Sbjct: 188 KEAFQWGLAAGVYSGLTYGLREAR-GCHDWKN 218




 Score = 29.3 bits (64), Expect(2) = 7e-09
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = -3

Query: 259 EQVVQSALTGAAISTAANLLSSVF 188
           + +V  A+TGAA+S+AA+LLS ++
Sbjct: 240 DHMVHFAITGAALSSAASLLSGIY 263



>gb|AAL23749.1| stress-inducible membrane pore protein [Bromus inermis]
          Length = 157

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 21/32 (65%), Positives = 25/32 (77%)
 Frame = -2

Query: 422 KETLLWGLAAGLYSGITYGMTEVRGGAHDWRN 327
           KE   WGLAAG+YSG+TYG+ E R G HDW+N
Sbjct: 82  KEAFQWGLAAGVYSGLTYGLREAR-GCHDWKN 112



>pir||T06471 core protein - garden pea|gi|1370287|emb|CAA97910.1| core protein
           [Pisum sativum]
          Length = 146

 Score = 36.6 bits (83), Expect(2) = 0.003
 Identities = 15/32 (46%), Positives = 20/32 (61%)
 Frame = -2

Query: 422 KETLLWGLAAGLYSGITYGMTEVRGGAHDWRN 327
           KE   WG  AG+Y G+ YG+  +R G  DW+N
Sbjct: 72  KEGAYWGAIAGVYVGMEYGVERIR-GTRDWKN 102




 Score = 23.9 bits (50), Expect(2) = 0.003
 Identities = 9/21 (42%), Positives = 16/21 (75%)
 Frame = -3

Query: 259 EQVVQSALTGAAISTAANLLS 197
           +++   A+TGAAI+TAA  ++
Sbjct: 123 DKIAVDAITGAAIATAAEFIN 143



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 6572620920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)