BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4138.Contig1
         (403 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_172042.1|  hypothetical protein; protein id: At1g0551...   107   4e-23
dbj|BAC43279.1|  unknown protein [Arabidopsis thaliana]            82   2e-15
dbj|BAC42624.1|  unknown protein [Arabidopsis thaliana]            82   2e-15
ref|NP_671908.1|  unknown protein; protein id: At2g31985.1 [...    74   4e-13
gb|AAD02495.1|  unknown [Oryza sativa]|gi|4105692|gb|AAD0249...    64   3e-10
>ref|NP_172042.1| hypothetical protein; protein id: At1g05510.1, supported by cDNA:
           gi_17979350, supported by cDNA: gi_20466016 [Arabidopsis
           thaliana]|gi|8778719|gb|AAF79727.1|AC005106_8 T25N20.16
           [Arabidopsis thaliana]|gi|17979351|gb|AAL49901.1|
           unknown protein [Arabidopsis
           thaliana]|gi|20466017|gb|AAM20230.1| unknown protein
           [Arabidopsis thaliana]
          Length = 241

 Score =  107 bits (266), Expect = 4e-23
 Identities = 54/68 (79%), Positives = 54/68 (79%)
 Frame = -3

Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
           DGQLYPEMIKETEKQFGVSID ERESRAYM GPDHGIHP            LREVDIKPV
Sbjct: 174 DGQLYPEMIKETEKQFGVSIDKERESRAYMKGPDHGIHPLANGGGKGLKLELREVDIKPV 233

Query: 197 ESVPRVFV 174
           ESVPRVFV
Sbjct: 234 ESVPRVFV 241
>dbj|BAC43279.1| unknown protein [Arabidopsis thaliana]
          Length = 241

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 42/68 (61%), Positives = 49/68 (71%)
 Frame = -3

Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
           DGQL+ EMI+E EK+FGVS++ ER+SRAYM GP+ GIHP            LREVDIKPV
Sbjct: 174 DGQLFHEMIQEAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGGKGMKLELREVDIKPV 233

Query: 197 ESVPRVFV 174
           ESV  VFV
Sbjct: 234 ESVGSVFV 241
>dbj|BAC42624.1| unknown protein [Arabidopsis thaliana]
          Length = 241

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 42/68 (61%), Positives = 49/68 (71%)
 Frame = -3

Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
           DGQL+ EMI+E EK+FGVS++ ER+SRAYM GP+ GIHP            LREVDIKPV
Sbjct: 174 DGQLFHEMIQEAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGGKGMKLELREVDIKPV 233

Query: 197 ESVPRVFV 174
           ESV  VFV
Sbjct: 234 ESVGSVFV 241
>ref|NP_671908.1| unknown protein; protein id: At2g31985.1 [Arabidopsis thaliana]
          Length = 256

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 43/83 (51%), Positives = 50/83 (59%), Gaps = 15/83 (18%)
 Frame = -3

Query: 377 DGQLYPEMIKET---------------EKQFGVSIDTERESRAYMMGPDHGIHPXXXXXX 243
           DGQL+ EMI+ET               EK+FGVS++ ER+SRAYM GP+ GIHP      
Sbjct: 174 DGQLFHEMIQETDKRFRVSIEKQPRPAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGG 233

Query: 242 XXXXXXLREVDIKPVESVPRVFV 174
                 LREVDIKPVESV  VFV
Sbjct: 234 KGMKLELREVDIKPVESVGSVFV 256
>gb|AAD02495.1| unknown [Oryza sativa]|gi|4105692|gb|AAD02496.1| embryo-specific
           protein [Oryza sativa subsp. indica]
          Length = 238

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 32/60 (53%), Positives = 37/60 (61%)
 Frame = -3

Query: 386 LLEDGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDI 207
           L  DGQL  E+ K  E++F VS D ERE+RAYM GPDHGIHP            LREVD+
Sbjct: 166 LTRDGQLRQELAKCVEEKFSVSFDKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDL 225
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 109
effective length of database: 283,232,527
effective search space used: 6797580648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results