BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4138.Contig1
(403 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172042.1| hypothetical protein; protein id: At1g0551... 107 4e-23
dbj|BAC43279.1| unknown protein [Arabidopsis thaliana] 82 2e-15
dbj|BAC42624.1| unknown protein [Arabidopsis thaliana] 82 2e-15
ref|NP_671908.1| unknown protein; protein id: At2g31985.1 [... 74 4e-13
gb|AAD02495.1| unknown [Oryza sativa]|gi|4105692|gb|AAD0249... 64 3e-10
>ref|NP_172042.1| hypothetical protein; protein id: At1g05510.1, supported by cDNA:
gi_17979350, supported by cDNA: gi_20466016 [Arabidopsis
thaliana]|gi|8778719|gb|AAF79727.1|AC005106_8 T25N20.16
[Arabidopsis thaliana]|gi|17979351|gb|AAL49901.1|
unknown protein [Arabidopsis
thaliana]|gi|20466017|gb|AAM20230.1| unknown protein
[Arabidopsis thaliana]
Length = 241
Score = 107 bits (266), Expect = 4e-23
Identities = 54/68 (79%), Positives = 54/68 (79%)
Frame = -3
Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
DGQLYPEMIKETEKQFGVSID ERESRAYM GPDHGIHP LREVDIKPV
Sbjct: 174 DGQLYPEMIKETEKQFGVSIDKERESRAYMKGPDHGIHPLANGGGKGLKLELREVDIKPV 233
Query: 197 ESVPRVFV 174
ESVPRVFV
Sbjct: 234 ESVPRVFV 241
>dbj|BAC43279.1| unknown protein [Arabidopsis thaliana]
Length = 241
Score = 82.0 bits (201), Expect = 2e-15
Identities = 42/68 (61%), Positives = 49/68 (71%)
Frame = -3
Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
DGQL+ EMI+E EK+FGVS++ ER+SRAYM GP+ GIHP LREVDIKPV
Sbjct: 174 DGQLFHEMIQEAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGGKGMKLELREVDIKPV 233
Query: 197 ESVPRVFV 174
ESV VFV
Sbjct: 234 ESVGSVFV 241
>dbj|BAC42624.1| unknown protein [Arabidopsis thaliana]
Length = 241
Score = 82.0 bits (201), Expect = 2e-15
Identities = 42/68 (61%), Positives = 49/68 (71%)
Frame = -3
Query: 377 DGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDIKPV 198
DGQL+ EMI+E EK+FGVS++ ER+SRAYM GP+ GIHP LREVDIKPV
Sbjct: 174 DGQLFHEMIQEAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGGKGMKLELREVDIKPV 233
Query: 197 ESVPRVFV 174
ESV VFV
Sbjct: 234 ESVGSVFV 241
>ref|NP_671908.1| unknown protein; protein id: At2g31985.1 [Arabidopsis thaliana]
Length = 256
Score = 73.9 bits (180), Expect = 4e-13
Identities = 43/83 (51%), Positives = 50/83 (59%), Gaps = 15/83 (18%)
Frame = -3
Query: 377 DGQLYPEMIKET---------------EKQFGVSIDTERESRAYMMGPDHGIHPXXXXXX 243
DGQL+ EMI+ET EK+FGVS++ ER+SRAYM GP+ GIHP
Sbjct: 174 DGQLFHEMIQETDKRFRVSIEKQPRPAEKRFGVSVEGERDSRAYMSGPELGIHPLANGGG 233
Query: 242 XXXXXXLREVDIKPVESVPRVFV 174
LREVDIKPVESV VFV
Sbjct: 234 KGMKLELREVDIKPVESVGSVFV 256
>gb|AAD02495.1| unknown [Oryza sativa]|gi|4105692|gb|AAD02496.1| embryo-specific
protein [Oryza sativa subsp. indica]
Length = 238
Score = 64.3 bits (155), Expect = 3e-10
Identities = 32/60 (53%), Positives = 37/60 (61%)
Frame = -3
Query: 386 LLEDGQLYPEMIKETEKQFGVSIDTERESRAYMMGPDHGIHPXXXXXXXXXXXXLREVDI 207
L DGQL E+ K E++F VS D ERE+RAYM GPDHGIHP LREVD+
Sbjct: 166 LTRDGQLRQELAKCVEEKFSVSFDKERENRAYMSGPDHGIHPLANAAGKGLKTDLREVDL 225
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 109
effective length of database: 283,232,527
effective search space used: 6797580648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)