BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4137.Contig1
(391 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51119.1|AC069144_16 dormancy related protein, putativ... 114 4e-25
ref|NP_564670.1| dormancy related protein, putative; protei... 114 4e-25
gb|AAL16204.1|AF428435_1 AT3g05260/T12H1_23 [Arabidopsis th... 101 2e-21
ref|NP_187177.1| putative glucose and ribitol dehydrogenase... 101 2e-21
gb|AAF89645.1|AF169018_1 seed maturation protein PM34 [Glyc... 91 3e-18
>gb|AAG51119.1|AC069144_16 dormancy related protein, putative [Arabidopsis thaliana]
Length = 286
Score = 114 bits (284), Expect = 4e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = -2
Query: 390 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 232
EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA
Sbjct: 234 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 286
>ref|NP_564670.1| dormancy related protein, putative; protein id: At1g54870.1
[Arabidopsis thaliana]|gi|25283122|pir||C96590
hypothetical protein T24C10.1 [imported] - Arabidopsis
thaliana|gi|9857515|gb|AAG00870.1|AC064840_1 Highly
similar to dehydrogenase/reductases [Arabidopsis
thaliana]|gi|13937155|gb|AAK50071.1|AF372931_1
At1g54870/F14C21_16 [Arabidopsis
thaliana]|gi|21700875|gb|AAM70561.1| At1g54870/F14C21_16
[Arabidopsis thaliana]
Length = 288
Score = 114 bits (284), Expect = 4e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = -2
Query: 390 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 232
EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA
Sbjct: 236 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 288
>gb|AAL16204.1|AF428435_1 AT3g05260/T12H1_23 [Arabidopsis thaliana]
Length = 289
Score = 101 bits (251), Expect = 2e-21
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2
Query: 390 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 232
EE IK FGSE PMKRA QP+EVAPSYVFLACNHCSSY+TGQ+LHPNGG +VNA
Sbjct: 237 EEAIKQFGSETPMKRAAQPVEVAPSYVFLACNHCSSYYTGQILHPNGGLIVNA 289
>ref|NP_187177.1| putative glucose and ribitol dehydrogenase homolog; protein id:
At3g05260.1, supported by cDNA: gi_16226574 [Arabidopsis
thaliana]|gi|6729036|gb|AAF27032.1|AC009177_22 putative
glucose and ribitol dehydrogenase homolog [Arabidopsis
thaliana]
Length = 289
Score = 101 bits (251), Expect = 2e-21
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -2
Query: 390 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 232
EE IK FGSE PMKRA QP+EVAPSYVFLACNHCSSY+TGQ+LHPNGG +VNA
Sbjct: 237 EEAIKQFGSETPMKRAAQPVEVAPSYVFLACNHCSSYYTGQILHPNGGLIVNA 289
>gb|AAF89645.1|AF169018_1 seed maturation protein PM34 [Glycine max]
Length = 293
Score = 91.3 bits (225), Expect = 3e-18
Identities = 42/52 (80%), Positives = 45/52 (85%)
Frame = -2
Query: 390 EEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVN 235
EE+ FG++VPMKRAGQPIEVAPSYVFLA N CSSY TGQVLHPNGG VVN
Sbjct: 241 EEETAQFGAQVPMKRAGQPIEVAPSYVFLASNQCSSYITGQVLHPNGGTVVN 292
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 105
effective length of database: 288,588,711
effective search space used: 6926129064
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)