BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4134.Contig1
(385 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188456.1| lipid transfer protein, putative; protein ... 91 3e-18
gb|AAG60123.1|AC073555_7 lipid transfer protein, putative [... 74 4e-13
ref|NP_564532.1| lipid transfer protein, putative; protein ... 74 4e-13
sp|P82353|NLT2_PRUAR Nonspecific lipid-transfer protein 2 (... 72 2e-12
pir||JQ2343 P48h-10 protein precursor - Zinnia elegans (cv.... 71 4e-12
>ref|NP_188456.1| lipid transfer protein, putative; protein id: At3g18280.1,
supported by cDNA: gi_14532557 [Arabidopsis
thaliana]|gi|9279661|dbj|BAB01177.1| lipid transfer
protein [Arabidopsis
thaliana]|gi|14532558|gb|AAK64007.1| AT3g18280/MIE15_7
[Arabidopsis thaliana]|gi|18655405|gb|AAL76158.1|
AT3g18280/MIE15_7 [Arabidopsis thaliana]
Length = 96
Score = 90.9 bits (224), Expect = 3e-18
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = -3
Query: 383 AKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCNLPIPRC 258
AKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSC LPIPRC
Sbjct: 55 AKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCKLPIPRC 96
>gb|AAG60123.1|AC073555_7 lipid transfer protein, putative [Arabidopsis thaliana]
Length = 87
Score = 73.9 bits (180), Expect = 4e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = -3
Query: 380 KLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCNLPIPRC 258
KL+EQ+PCLCGYMRNP+LR++VS+PNARKVS SC +P P C
Sbjct: 47 KLREQQPCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC 87
>ref|NP_564532.1| lipid transfer protein, putative; protein id: At1g48750.1,
supported by cDNA: gi_15028044, supported by cDNA:
gi_20258874 [Arabidopsis
thaliana]|gi|15028045|gb|AAK76553.1| putative lipid
transfer protein [Arabidopsis
thaliana]|gi|20258875|gb|AAM14109.1| putative lipid
transfer protein [Arabidopsis thaliana]
Length = 94
Score = 73.9 bits (180), Expect = 4e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = -3
Query: 380 KLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCNLPIPRC 258
KL+EQ+PCLCGYMRNP+LR++VS+PNARKVS SC +P P C
Sbjct: 54 KLREQQPCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC 94
>sp|P82353|NLT2_PRUAR Nonspecific lipid-transfer protein 2 (LTP 2)
Length = 68
Score = 72.0 bits (175), Expect = 2e-12
Identities = 26/41 (63%), Positives = 39/41 (94%)
Frame = -3
Query: 380 KLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCNLPIPRC 258
KL+EQRPCLCGY++NPSLR++V++PNARK++ +C +P+P+C
Sbjct: 28 KLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68
>pir||JQ2343 P48h-10 protein precursor - Zinnia elegans (cv. Envy)
Length = 95
Score = 70.9 bits (172), Expect = 4e-12
Identities = 27/42 (64%), Positives = 38/42 (90%)
Frame = -3
Query: 383 AKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCNLPIPRC 258
AK+KEQ+PCLC YM+NPSL+ +VS+PNA+KV+ +C +PIP+C
Sbjct: 54 AKIKEQKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC 95
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 103
effective length of database: 291,266,803
effective search space used: 6990403272
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)