BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4133.Contig1
(360 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A25877 cytochrome-c oxidase (EC 1.9.3.1) chain III - C... 33 0.66
ref|NP_569068.1| NADH dehydrogenase subunit 4 [Crioceris du... 32 1.5
ref|NP_496614.1| Serpentine receptor Sre, putative G protei... 32 2.5
gb|AAK73859.2|AF098988_2 Hypothetical protein C50E10.10 [Ca... 32 2.5
gb|EAA16339.1| hypothetical protein [Plasmodium yoelii yoelii] 31 3.3
>pir||A25877 cytochrome-c oxidase (EC 1.9.3.1) chain III - Crithidia fasciculata
mitochondrion (fragment)
Length = 287
Score = 33.5 bits (75), Expect = 0.66
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -1
Query: 258 YCCFTCSFGNLSENLYGTIGQLSALVSISSFCEFIL-LFLPFLVI--WHVWFLGITFPPF 88
+CC C +G + + + L I++F F+ LF+ F++ W +FL + F +
Sbjct: 128 FCCLICDYGFVFYWYFIDVFNLL----INTFLLFVSGLFVNFVLFLFWFRFFLCVLFVLW 183
Query: 87 GLCL*GFLFIRRLMYDFRLVCSRCN 13
L GFLF+ +++F L+ C+
Sbjct: 184 SAILFGFLFLWNQVWEFALLFVTCS 208
>ref|NP_569068.1| NADH dehydrogenase subunit 4 [Crioceris
duodecimpunctata]|gi|18308214|gb|AAL67869.1|AF467886_9
NADH dehydrogenase subunit 4 [Crioceris
duodecimpunctata]
Length = 443
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = -1
Query: 297 LQKDVLILWHYQSYCCFTCSFGNLSE----NLYGTIGQLSALVSISSFCEFILLFLPF 136
L K +L ++ ++ F GN++ NL+ I +++L+S S+FC +IL+ L F
Sbjct: 330 LSKGLLNIFPSLAFWWFMLLIGNMAAPLTLNLFSEIMLINSLISYSNFCLYILILLSF 387
>ref|NP_496614.1| Serpentine receptor Sre, putative G protein-coupled chemoreceptor
family member [Caenorhabditis
elegans]|gi|7497735|pir||T33505 hypothetical protein
C50E10.10 - Caenorhabditis elegans
Length = 392
Score = 31.6 bits (70), Expect = 2.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -1
Query: 198 QLSALVSISSFCEFILLFLPFLVIWHV---WFLGIT 100
+LS +V + +F + + L+LP L IWH F+G+T
Sbjct: 103 ELSDMVQVPNFFQVLALYLPGLFIWHYIYSMFIGVT 138
>gb|AAK73859.2|AF098988_2 Hypothetical protein C50E10.10 [Caenorhabditis elegans]
Length = 347
Score = 31.6 bits (70), Expect = 2.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -1
Query: 198 QLSALVSISSFCEFILLFLPFLVIWHV---WFLGIT 100
+LS +V + +F + + L+LP L IWH F+G+T
Sbjct: 103 ELSDMVQVPNFFQVLALYLPGLFIWHYIYSMFIGVT 138
>gb|EAA16339.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 593
Score = 31.2 bits (69), Expect = 3.3
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 12/69 (17%)
Frame = +2
Query: 17 QREHTSRKS-----YISRRINKNP*RQRPKGGKVIPKNQTCQITKK-------GKNNKIN 160
++ H ++K+ ++R N R KGGK + K T QITK+ GK N +
Sbjct: 16 EKNHLNKKTGGVKVNYTKRDKNNTDRNDKKGGKKVAKKITKQITKQISKQNEGGKKNLVE 75
Query: 161 SQKEEMETK 187
+K++ + K
Sbjct: 76 KKKQKSDKK 84
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 95
effective length of database: 301,979,171
effective search space used: 7247500104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)