BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z26355.f
(401 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86158 F22D16.15 protein - Arabidopsis thaliana|gi|605... 34 1e-09
ref|NP_563666.1| glycosyl hydrolase family 1; protein id: A... 34 1e-09
gb|AAL92115.1|AF486839_1 hydroxyisourate hydrolase [Glycine... 28 0.002
gb|AAK07429.1|AF321287_1 beta-glucosidase [Musa acuminata] 29 0.002
pir||T46605 beta-glucosidase (EC 3.2.1.21) bglC [imported] ... 27 0.033
>pir||G86158 F22D16.15 protein - Arabidopsis
thaliana|gi|6056418|gb|AAF02882.1|AC009525_16 Similar to
beta-glucosidases [Arabidopsis thaliana]
Length = 497
Score = 33.9 bits (76), Expect(4) = 1e-09
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = -3
Query: 396 LTAVSXA*NTAEMTTPPGFDFGSGTSAYQV 307
LTAVS + PPGF FGSGTSAYQV
Sbjct: 18 LTAVSSL-KYSRNDFPPGFVFGSGTSAYQV 46
Score = 31.2 bits (69), Expect(4) = 1e-09
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 154 GERPSIWDVFAHAG 113
G PSIWDVFAHAG
Sbjct: 54 GRTPSIWDVFAHAG 67
Score = 28.5 bits (62), Expect(4) = 1e-09
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1
Query: 191 NSQQVEGAADEDGRT 147
++ QVEGAADEDGRT
Sbjct: 42 SAYQVEGAADEDGRT 56
Score = 26.6 bits (57), Expect(4) = 1e-09
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = -3
Query: 36 SGHSGVAAGNVA 1
+GHSGVAAGNVA
Sbjct: 66 AGHSGVAAGNVA 77
>ref|NP_563666.1| glycosyl hydrolase family 1; protein id: At1g02850.1, supported by
cDNA: gi_15146265, supported by cDNA: gi_17065373
[Arabidopsis thaliana]|gi|15146266|gb|AAK83616.1|
At1g02850/F22D16_15 [Arabidopsis
thaliana]|gi|17065374|gb|AAL32841.1| Similar to
beta-glucosidases [Arabidopsis
thaliana]|gi|24797032|gb|AAN64528.1| At1g02850/F22D16_15
[Arabidopsis thaliana]
Length = 470
Score = 33.9 bits (76), Expect(4) = 1e-09
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = -3
Query: 396 LTAVSXA*NTAEMTTPPGFDFGSGTSAYQV 307
LTAVS + PPGF FGSGTSAYQV
Sbjct: 18 LTAVSSL-KYSRNDFPPGFVFGSGTSAYQV 46
Score = 31.2 bits (69), Expect(4) = 1e-09
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 154 GERPSIWDVFAHAG 113
G PSIWDVFAHAG
Sbjct: 54 GRTPSIWDVFAHAG 67
Score = 28.5 bits (62), Expect(4) = 1e-09
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1
Query: 191 NSQQVEGAADEDGRT 147
++ QVEGAADEDGRT
Sbjct: 42 SAYQVEGAADEDGRT 56
Score = 26.6 bits (57), Expect(4) = 1e-09
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = -3
Query: 36 SGHSGVAAGNVA 1
+GHSGVAAGNVA
Sbjct: 66 AGHSGVAAGNVA 77
>gb|AAL92115.1|AF486839_1 hydroxyisourate hydrolase [Glycine max]
Length = 560
Score = 28.1 bits (61), Expect(3) = 0.002
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -2
Query: 160 KMGERPSIWDVFAHAG 113
K G PSIWD FA+AG
Sbjct: 61 KDGRTPSIWDTFAYAG 76
Score = 26.9 bits (58), Expect(3) = 0.002
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 396 LTAVSXA*NTAEMTTPPGFDFGSGTSAYQV 307
+ V A N + P F FGSGTSAYQV
Sbjct: 26 VVGVLGADNYSRDDFPLDFVFGSGTSAYQV 55
Score = 25.0 bits (53), Expect(3) = 0.002
Identities = 10/15 (66%), Positives = 14/15 (92%)
Frame = -1
Query: 191 NSQQVEGAADEDGRT 147
++ QVEGAA++DGRT
Sbjct: 51 SAYQVEGAANKDGRT 65
>gb|AAK07429.1|AF321287_1 beta-glucosidase [Musa acuminata]
Length = 551
Score = 28.9 bits (63), Expect(3) = 0.002
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 351 PPGFDFGSGTSAYQV 307
P GF FG+GTSAYQV
Sbjct: 36 PAGFIFGAGTSAYQV 50
Score = 28.1 bits (61), Expect(3) = 0.002
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 154 GERPSIWDVFAHAG 113
G PSIWD F HAG
Sbjct: 58 GRTPSIWDTFTHAG 71
Score = 22.7 bits (47), Expect(3) = 0.002
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -1
Query: 191 NSQQVEGAADEDGRT 147
++ QVEGAA E GRT
Sbjct: 46 SAYQVEGAAAEGGRT 60
>pir||T46605 beta-glucosidase (EC 3.2.1.21) bglC [imported] - Streptomyces
reticuli (fragment)|gi|5327254|emb|CAB46345.1| BGLC
protein [Streptomyces reticuli]
Length = 238
Score = 27.3 bits (59), Expect(3) = 0.033
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 372 NTAEMTTPPGFDFGSGTSAYQV 307
+ + +T PP F +G+ TSAYQ+
Sbjct: 4 SVSSLTFPPAFLWGAATSAYQI 25
Score = 24.6 bits (52), Expect(3) = 0.033
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -2
Query: 154 GERPSIWDVFAH 119
G PSIWD F+H
Sbjct: 33 GRTPSIWDTFSH 44
Score = 23.5 bits (49), Expect(3) = 0.033
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 191 NSQQVEGAADEDGRT 147
++ Q+EGA EDGRT
Sbjct: 21 SAYQIEGAVREDGRT 35
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 109
effective length of database: 283,232,527
effective search space used: 6797580648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)