BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4131.Contig1
(260 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42382.1| putative C2H2-type zinc finger protein [Ara... 79 2e-14
ref|NP_172910.2| zinc finger protein, putative; protein id:... 51 5e-06
gb|AAF63168.1|AC010657_4 T5E21.8 [Arabidopsis thaliana] 51 5e-06
ref|NP_192176.1| putative zinc finger protein; protein id: ... 30 6.4
ref|XP_133876.1| RIKEN cDNA 2410003A14 [Mus musculus] 30 6.4
>dbj|BAC42382.1| putative C2H2-type zinc finger protein [Arabidopsis thaliana]
Length = 516
Score = 79.0 bits (193), Expect = 2e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +1
Query: 127 GTGDNDFNRKDTFMSMIQQPNSSAPPPKKRXNQPGKP 237
GTGDNDFNRKDTFMSMIQQPNSSAPPPKKR NQPG P
Sbjct: 27 GTGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNP 63
Score = 31.6 bits (70), Expect = 2.9
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = +2
Query: 206 PRNXETNPGNPNPDAEVV 259
P+ PGNPNPDAEVV
Sbjct: 53 PKKRRNQPGNPNPDAEVV 70
>ref|NP_172910.2| zinc finger protein, putative; protein id: At1g14580.1, supported
by cDNA: gi_20259483 [Arabidopsis
thaliana]|gi|20259484|gb|AAM13862.1| putative zinc
finger protein [Arabidopsis
thaliana]|gi|22136762|gb|AAM91700.1| putative zinc
finger protein [Arabidopsis thaliana]
Length = 467
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Frame = +1
Query: 127 GTGDNDFNRKDTFMSMIQQ-PNSS-APPPKKRXNQPGKP 237
G G N+FNR++ M+M+QQ P SS APPPKKR NQPG P
Sbjct: 24 GPGPNNFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPGNP 62
Score = 31.2 bits (69), Expect = 3.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 206 PRNXETNPGNPNPDAEVV 259
P+ PGNPNPDAEV+
Sbjct: 52 PKKRRNQPGNPNPDAEVI 69
>gb|AAF63168.1|AC010657_4 T5E21.8 [Arabidopsis thaliana]
Length = 499
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Frame = +1
Query: 127 GTGDNDFNRKDTFMSMIQQ-PNSS-APPPKKRXNQPGKP 237
G G N+FNR++ M+M+QQ P SS APPPKKR NQPG P
Sbjct: 24 GPGPNNFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPGNP 62
>ref|NP_192176.1| putative zinc finger protein; protein id: At4g02670.1 [Arabidopsis
thaliana]|gi|7488224|pir||T01082 probable zinc finger
protein T10P11.4 - Arabidopsis
thaliana|gi|3892045|gb|AAC78253.1|AAC78253 putative zinc
finger protein [Arabidopsis
thaliana]|gi|7269752|emb|CAB77752.1| putative zinc
finger protein [Arabidopsis thaliana]
Length = 402
Score = 30.4 bits (67), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 194 QLHHPRNXETNPGNPNPDAEVV 259
+ H P+ PGNP+PDAEV+
Sbjct: 48 ETHKPKKKRGLPGNPDPDAEVI 69
>ref|XP_133876.1| RIKEN cDNA 2410003A14 [Mus musculus]
Length = 381
Score = 30.4 bits (67), Expect = 6.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 130 TGDNDFNRKDTFMSMIQQPNSSAPPPKKRXNQPGKPK 240
T +N FN+ TF ++ + P PK R ++P +P+
Sbjct: 201 TAENTFNKTHTFHFLLGSIHGEFPVPKPRSDRPRQPR 237
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 62
effective length of database: 346,167,689
effective search space used: 8308024536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)