BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4130.Contig1
(349 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176708.1| acyl carrier protein, putative; protein id... 42 0.002
gb|AAM62469.1| acyl carrier protein, putative [Arabidopsis ... 42 0.002
ref|NP_035242.1| poly (A) polymerase alpha [Mus musculus]|g... 30 5.7
pir||E71615 probable amine transporter PFB0435c - malaria p... 30 9.8
ref|NP_473015.2| hypothetical protein [Plasmodium falciparu... 30 9.8
>ref|NP_176708.1| acyl carrier protein, putative; protein id: At1g65290.1, supported
by cDNA: 14066. [Arabidopsis
thaliana]|gi|7442279|pir||T02351 probable acyl carrier
protein T8F5.6 - Arabidopsis
thaliana|gi|3335337|gb|AAC27139.1|AAC27139 Similar to
acyl carrier protein, mitochondrial precursor (ACP)
NADH-ubiquinone oxidoreductase 9.6 KD subunit (MYACP-1),
gb|L23574 from A. thaliana. ESTs gb|Z30712, gb|Z30713,
gb|Z26204, gb|N37975 and gb|N96330 come from this gene.
[Arabidopsis thaliana]
Length = 126
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/37 (64%), Positives = 26/37 (69%)
Frame = +1
Query: 1 MALEEELGFXSP***SRPRPRPIDLAVDFIASHPQAK 111
MALEEE GF P + + IDLAVDFIASHPQAK
Sbjct: 91 MALEEEFGFEIPDN-EADKIQSIDLAVDFIASHPQAK 126
>gb|AAM62469.1| acyl carrier protein, putative [Arabidopsis thaliana]
Length = 126
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/37 (64%), Positives = 26/37 (69%)
Frame = +1
Query: 1 MALEEELGFXSP***SRPRPRPIDLAVDFIASHPQAK 111
MALEEE GF P + + IDLAVDFIASHPQAK
Sbjct: 91 MALEEEFGFEIPDN-EADKIQSIDLAVDFIASHPQAK 126
>ref|NP_035242.1| poly (A) polymerase alpha [Mus
musculus]|gi|25090856|sp|Q61183|PAP_MOUSE Poly(A)
polymerase alpha (PAP) (Polynucleotide
adenylyltransferase)|gi|21623967|dbj|BAC00996.1| polyA
polymerase [Mus musculus]
Length = 739
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +3
Query: 45 KQTKTQAHRSSR*LYCFSSSG*VKRETNSSVFMRASAVSTDFVKA 179
K+TKT+ +S C + SG K ET V + SAV ++ V A
Sbjct: 656 KKTKTEEDETSEDANCLALSGHDKTETKEQVDLETSAVQSETVPA 700
>pir||E71615 probable amine transporter PFB0435c - malaria parasite (Plasmodium
falciparum)
Length = 1138
Score = 29.6 bits (65), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 208 FLFVMRMDKLLCWLYYSGFISIRCVS 285
F ++ +M+K LC LYY + + C S
Sbjct: 817 FTYLKKMEKTLCMLYYGSYAVLSCAS 842
>ref|NP_473015.2| hypothetical protein [Plasmodium falciparum
3D7]|gi|23503385|gb|AAC71876.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 912
Score = 29.6 bits (65), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 208 FLFVMRMDKLLCWLYYSGFISIRCVS 285
F ++ +M+K LC LYY + + C S
Sbjct: 795 FTYLKKMEKTLCMLYYGSYAVLSCAS 820
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 91
effective length of database: 307,335,355
effective search space used: 7376048520
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)