BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.41.cl.4129.Contig1
(334 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativ... 67 6e-11
dbj|BAC24851.1| ribosomal protein S18-like [Oryza sativa (j... 67 6e-11
dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativ... 67 6e-11
gb|AAK43840.1|AF370463_1 S18.A ribosomal protein [Arabidops... 67 6e-11
ref|NP_173692.1| putative 40S ribosomal protein S18; protei... 67 6e-11
>dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)]|gi|28269440|gb|AAO37983.1| putative
ribosomal protein S18A [Oryza sativa (japonica
cultivar-group)]
Length = 152
Score = 67.0 bits (162), Expect = 6e-11
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2
Query: 333 DDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 202
DDLERLKKIRNHRGLRHYWGLRVRGQH VSKKR
Sbjct: 109 DDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>dbj|BAC24851.1| ribosomal protein S18-like [Oryza sativa (japonica cultivar-group)]
Length = 145
Score = 67.0 bits (162), Expect = 6e-11
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2
Query: 333 DDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 202
DDLERLKKIRNHRGLRHYWGLRVRGQH VSKKR
Sbjct: 102 DDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 145
>dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)]
Length = 148
Score = 67.0 bits (162), Expect = 6e-11
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2
Query: 333 DDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 202
DDLERLKKIRNHRGLRHYWGLRVRGQH VSKKR
Sbjct: 105 DDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 148
>gb|AAK43840.1|AF370463_1 S18.A ribosomal protein [Arabidopsis
thaliana]|gi|17978783|gb|AAL47385.1| S18.A ribosomal
protein [Arabidopsis thaliana]
Length = 152
Score = 67.0 bits (162), Expect = 6e-11
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2
Query: 333 DDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 202
DDLERLKKIRNHRGLRHYWGLRVRGQH VSKKR
Sbjct: 109 DDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>ref|NP_173692.1| putative 40S ribosomal protein S18; protein id: At1g22780.1,
supported by cDNA: 35333., supported by cDNA:
gi_15724157 [Arabidopsis
thaliana]|gi|15234790|ref|NP_192718.1| S18.A ribosomal
protein; protein id: At4g09800.1, supported by cDNA:
24071., supported by cDNA: gi_13877524, supported by
cDNA: gi_14423407 [Arabidopsis
thaliana]|gi|18399100|ref|NP_564434.1| ribosomal protein
S18, putative; protein id: At1g34030.1, supported by
cDNA: 27800., supported by cDNA: gi_14334583, supported
by cDNA: gi_17979112 [Arabidopsis
thaliana]|gi|464707|sp|P34788|RS18_ARATH 40S ribosomal
protein S18|gi|480908|pir||S37496 ribosomal protein
S18.A, cytosolic - Arabidopsis
thaliana|gi|405613|emb|CAA80684.1| ribosomal protein
S18A [Arabidopsis thaliana]|gi|434343|emb|CAA82273.1|
S18 ribosomal protein [Arabidopsis
thaliana]|gi|434345|emb|CAA82274.1| S18 ribosomal
protein [Arabidopsis thaliana]|gi|434906|emb|CAA82275.1|
S18 ribosomal protein [Arabidopsis
thaliana]|gi|2505871|emb|CAA72909.1| ribosomal protein
S18A [Arabidopsis
thaliana]|gi|3287678|gb|AAC25506.1|AAC25506 Match to
ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from A.
thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene. [Arabidopsis
thaliana]|gi|4538910|emb|CAB39647.1| S18.A ribosomal
protein [Arabidopsis
thaliana]|gi|7267675|emb|CAB78103.1| S18.A ribosomal
protein [Arabidopsis
thaliana]|gi|10086474|gb|AAG12534.1|AC015446_15
ribosomal protein S18 [Arabidopsis
thaliana]|gi|10092450|gb|AAG12853.1|AC079286_10 40S
ribosomal protein S18; 25853-24673 [Arabidopsis
thaliana]|gi|14334584|gb|AAK59471.1| putative ribosomal
protein S18 [Arabidopsis
thaliana]|gi|14423408|gb|AAK62386.1|AF386941_1 S18.A
ribosomal protein [Arabidopsis
thaliana]|gi|15724158|gb|AAL06471.1|AF411781_1
At1g22780/T22J18_5 [Arabidopsis
thaliana]|gi|17979113|gb|AAL47500.1| putative ribosomal
protein S18 [Arabidopsis
thaliana]|gi|21555397|gb|AAM63849.1| ribosomal protein
S18, putative [Arabidopsis
thaliana]|gi|21592452|gb|AAM64403.1| ribosomal protein
S18, putative [Arabidopsis
thaliana]|gi|21593027|gb|AAM64976.1| ribosomal protein
S18, putative [Arabidopsis thaliana]
Length = 152
Score = 67.0 bits (162), Expect = 6e-11
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2
Query: 333 DDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 202
DDLERLKKIRNHRGLRHYWGLRVRGQH VSKKR
Sbjct: 109 DDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 86
effective length of database: 314,030,585
effective search space used: 7536734040
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)