BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.010.Contig4
         (720 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_577872.1|  quinolone resistance protein norA homolog ...    34   2.3  
pir||B96766  protein kinesin F2P9.27 [imported] - Arabidopsi...    33   3.9  
ref|NP_177527.2|  kinesin-related protein; protein id: At1g7...    33   3.9  
ref|NP_704070.1|  hypothetical protein [Plasmodium falciparu...    32   8.6  
ref|NP_507046.1|  Predicted CDS, 7 transmembrane chemorecept...    32   8.6  

>ref|NP_577872.1| quinolone resistance protein norA homolog [Pyrococcus furiosus DSM
           3638]|gi|18892064|gb|AAL80267.1| quinolone resistance
           protein norA homolog [Pyrococcus furiosus DSM 3638]
          Length = 387

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 28/105 (26%), Positives = 51/105 (47%)
 Frame = +3

Query: 87  FLEIFIYSPLFIGDVSISGSMLCIFLWFKC*SLRLEIYSSYMNSLSSYRNLDDARTILFR 266
           F+  FI+S +F    S  GS+  + +W +  S++ E  S   N    YR L   R+ +  
Sbjct: 159 FVSAFIFSGIF----SFIGSLFVLIVWREIGSVKSEKASERGN----YRELL-RRSFVSA 209

Query: 267 PVRLDLLATRDGCNQLFLPYLFSLSGYVICIYSMWKF*FGLLAYI 401
            V L L++        +LP L+ +SG+   ++ M+    G+ ++I
Sbjct: 210 SVSLFLISMAYSGVVTYLPALYKVSGFGQSVFGMYMMFVGIASFI 254



>pir||B96766 protein kinesin F2P9.27 [imported] - Arabidopsis
           thaliana|gi|12325157|gb|AAG52533.1|AC016662_27 putative
           kinesin; 97201-101676 [Arabidopsis thaliana]
          Length = 987

 Score = 33.1 bits (74), Expect = 3.9
 Identities = 22/65 (33%), Positives = 33/65 (49%)
 Frame = -2

Query: 719 LSISLWESSLMTRRRKTESLLQN*ESSSKVQKTNLQIGRKYGREVNPEED*LKTPESNQR 540
           L IS  +  L T +RK E      ES +K +K+  +  +K     N EED  K  + N +
Sbjct: 233 LEISALKQELETTKRKYEQQYSQIESQTKTEKSKWEEQKK-----NEEEDMDKLLKENDQ 287

Query: 539 WNLQV 525
           +NLQ+
Sbjct: 288 FNLQI 292



>ref|NP_177527.2| kinesin-related protein; protein id: At1g73860.1 [Arabidopsis
           thaliana]
          Length = 1030

 Score = 33.1 bits (74), Expect = 3.9
 Identities = 22/65 (33%), Positives = 33/65 (49%)
 Frame = -2

Query: 719 LSISLWESSLMTRRRKTESLLQN*ESSSKVQKTNLQIGRKYGREVNPEED*LKTPESNQR 540
           L IS  +  L T +RK E      ES +K +K+  +  +K     N EED  K  + N +
Sbjct: 243 LEISALKQELETTKRKYEQQYSQIESQTKTEKSKWEEQKK-----NEEEDMDKLLKENDQ 297

Query: 539 WNLQV 525
           +NLQ+
Sbjct: 298 FNLQI 302



>ref|NP_704070.1| hypothetical protein [Plasmodium falciparum
           3D7]|gi|23498808|emb|CAD50885.1| hypothetical protein
           [Plasmodium falciparum 3D7]
          Length = 357

 Score = 32.0 bits (71), Expect = 8.6
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = +3

Query: 306 NQLFLPYLFSLSGYVICIYSMWKF*FGLLAYIDLYLIHHEFMRWLISIDIYSVDCRGRKN 485
           N+L + YL+++S  +IC YS+W     +L Y  +Y +   F+ +L  I            
Sbjct: 118 NKLKIRYLYNVSNSIICYYSLW-----ILCYYLIYFLC--FLSFLYGI-----------R 159

Query: 486 KFQPWTVVVSTGMNLEVPSLVGFRCFELIFFWVYFSTI 599
           KF    + + T    ++  L  +   E  F  +Y++ I
Sbjct: 160 KFNNNVINIYTLRTCKIDKLTNYILSENTFISLYWAII 197



>ref|NP_507046.1| Predicted CDS, 7 transmembrane chemoreceptor family member family
           member [Caenorhabditis elegans]|gi|7499119|pir||T20920
           hypothetical protein F14H3.1 - Caenorhabditis
           elegans|gi|3875925|emb|CAB05480.1| C. elegans SRJ-10
           protein (corresponding sequence F14H3.1) [Caenorhabditis
           elegans]
          Length = 335

 Score = 32.0 bits (71), Expect = 8.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 154 AFSYGLNANHFGSRSTLPT*IHYLHIGIWMMLGRFCFDLFA*IYWQRGMDVISF 315
           + SYG+   HF  R ++ T I +  +G W +LG F F +   I W    +++ +
Sbjct: 100 SLSYGILVIHFVYRYSVFTQISHQKLGFWALLGLFIFLISHGIVWSSVCELLLY 153



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 32381048040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)