BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.010.Contig3
         (3792 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_690471.1|  Orf52 [Heliothis zea virus 1]|gi|22671519|...    37   1.8  
gb|AAA97428.1|  ATPase 6                                           37   2.3  
ref|NP_651584.1|  CG12877-PA [Drosophila melanogaster]|gi|73...    37   3.0  
gb|AAN71248.1|  LD30051p [Drosophila melanogaster]                 37   3.0  
ref|NP_733234.1|  CG12877-PB [Drosophila melanogaster]|gi|23...    37   3.0  

>ref|NP_690471.1| Orf52 [Heliothis zea virus 1]|gi|22671519|gb|AAN04346.1|AF451898_51
            Orf52 [Heliothis zea virus 1]
          Length = 1324

 Score = 37.4 bits (85), Expect = 1.8
 Identities = 25/80 (31%), Positives = 33/80 (41%)
 Frame = -2

Query: 2246 NIYNKRQGLRLKTEMPTSLRKSTFNLKNQKSSHVENSLMVQSRPQAKPSPSEELRDRYPK 2067
            N  NK QG + K        K ++N  N KS+H  N+ +       KP     L   YP 
Sbjct: 1087 NCKNKHQGYKNKNRSHYKSFKHSYNSNNNKSNHNNNNNLY-----TKPCT---LNQTYPT 1138

Query: 2066 IFENAQYKNYLKGQGIRTNS 2007
             F+   YK Y K     TN+
Sbjct: 1139 TFKVKNYKKYNKSSNSNTNN 1158



>gb|AAA97428.1| ATPase 6
          Length = 231

 Score = 37.0 bits (84), Expect = 2.3
 Identities = 50/213 (23%), Positives = 84/213 (38%), Gaps = 2/213 (0%)
 Frame = +2

Query: 1124 LRMSWCFWF-LLFYTTFGLIIVLFN-IG*CW*GMISFSVSCCVFQILFINQFSLFLFCVH 1297
            L M +C W  L F   F  ++++F+ +  C   +  F V  C+F +L+   F+L+     
Sbjct: 16   LCMYYCVWSRLCFIVYFNCLMLIFDFLLFCLFDLYLF-VGLCLFLLLWFMLFNLY----- 69

Query: 1298 IQMKDEHIFLADEFFPISCPFYK*LFY*SLQVSQ*CYVLAPLMWFIQVLFLFASGICCNL 1477
                             S   Y  + Y +L      Y+L  +++ + + FLF     C+ 
Sbjct: 70   -----------------SLILYYCITYLNL------YLLFCIVFLLYIAFLFLFCFLCDF 106

Query: 1478 FVLTYALVNWSIPXXXXXXXXXXXXXACDGVFFYVKCPILLGFLKMQRRLVLSQCILKDI 1657
            F+    LV  S                C    F + C  L  FL++   L+ S  +L   
Sbjct: 107  FLFNNLLVGDSF-----MDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLMF 161

Query: 1658 FDLSWFLLPFWRCLISLCFLFKVFNFPIT*CFC 1756
            FD  +F+  F+   +  C+ F +F F    CFC
Sbjct: 162  FDFFYFIFVFFFYGV-FCYWFILFIFVF--CFC 191



>ref|NP_651584.1| CG12877-PA [Drosophila melanogaster]|gi|7301627|gb|AAF56745.1|
           CG12877-PA [Drosophila melanogaster]
          Length = 1010

 Score = 36.6 bits (83), Expect = 3.0
 Identities = 34/156 (21%), Positives = 68/156 (42%)
 Frame = -2

Query: 587 QNLENQLISEKRKLRSEDEDRIRIRLKTYPRENA*QKSRKKQSPIDHSLIHTLQQQNRKR 408
           +++E + I E ++ + +D DR R R +   +E + ++ R+K+           +    KR
Sbjct: 185 RDIEKKKIRELKREKIKDRDRDRDRDREKDKEKSKERDREKE-----------KNDRDKR 233

Query: 407 *SDHN*LPKKLRDETXXXXXXXXXXXXXXXXXNTP*RRSSIEKPRENIRSIKSIPERSNH 228
            S H+    K R +                  ++  + SS +K R++  S       S H
Sbjct: 234 KSSHS---DKERSKERNTSSSSSSKHKSSSSSSSSKKSSSSDKHRDDKSS------SSRH 284

Query: 227 RTTI*NNRGKSKSHEHKKPSMQFRNKP*KNQISMEN 120
           +++  ++   SKSH HK  S   R+K  ++  S ++
Sbjct: 285 KSS--SSSSSSKSHHHKSSSSSSRSKTKRSSSSSKS 318



>gb|AAN71248.1| LD30051p [Drosophila melanogaster]
          Length = 864

 Score = 36.6 bits (83), Expect = 3.0
 Identities = 34/156 (21%), Positives = 68/156 (42%)
 Frame = -2

Query: 587 QNLENQLISEKRKLRSEDEDRIRIRLKTYPRENA*QKSRKKQSPIDHSLIHTLQQQNRKR 408
           +++E + I E ++ + +D DR R R +   +E + ++ R+K+           +    KR
Sbjct: 58  RDIEKKKIRELKREKIKDRDRDRDRDREKDKEKSKERDREKE-----------KNDRDKR 106

Query: 407 *SDHN*LPKKLRDETXXXXXXXXXXXXXXXXXNTP*RRSSIEKPRENIRSIKSIPERSNH 228
            S H+    K R +                  ++  + SS +K R++  S       S H
Sbjct: 107 KSSHS---DKERSKERNTSSSSSSKHKSSSSSSSSKKSSSSDKHRDDKSS------SSRH 157

Query: 227 RTTI*NNRGKSKSHEHKKPSMQFRNKP*KNQISMEN 120
           +++  ++   SKSH HK  S   R+K  ++  S ++
Sbjct: 158 KSS--SSSSSSKSHHHKSSSSSSRSKTKRSSSSSKS 191



>ref|NP_733234.1| CG12877-PB [Drosophila melanogaster]|gi|23172468|gb|AAN14129.1|
           CG12877-PB [Drosophila melanogaster]
          Length = 956

 Score = 36.6 bits (83), Expect = 3.0
 Identities = 34/156 (21%), Positives = 68/156 (42%)
 Frame = -2

Query: 587 QNLENQLISEKRKLRSEDEDRIRIRLKTYPRENA*QKSRKKQSPIDHSLIHTLQQQNRKR 408
           +++E + I E ++ + +D DR R R +   +E + ++ R+K+           +    KR
Sbjct: 185 RDIEKKKIRELKREKIKDRDRDRDRDREKDKEKSKERDREKE-----------KNDRDKR 233

Query: 407 *SDHN*LPKKLRDETXXXXXXXXXXXXXXXXXNTP*RRSSIEKPRENIRSIKSIPERSNH 228
            S H+    K R +                  ++  + SS +K R++  S       S H
Sbjct: 234 KSSHS---DKERSKERNTSSSSSSKHKSSSSSSSSKKSSSSDKHRDDKSS------SSRH 284

Query: 227 RTTI*NNRGKSKSHEHKKPSMQFRNKP*KNQISMEN 120
           +++  ++   SKSH HK  S   R+K  ++  S ++
Sbjct: 285 KSS--SSSSSSKSHHHKSSSSSSRSKTKRSSSSSKS 318



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 135
effective length of database: 248,417,331
effective search space used: 280214749368
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)