BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47654.r
         (205 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_325891.1|  unknown; predicted coding region [Mycoplas...    30   9.0  
emb|CAC81793.1|  transposase-like protein B [Clostridium dif...    30   9.0  

>ref|NP_325891.1| unknown; predicted coding region [Mycoplasma
           pulmonis]|gi|25392378|pir||D90519 hypothetical protein
           MYPU_0600 [imported] - Mycoplasma pulmonis (strain UAB
           CTIP)|gi|14089473|emb|CAC13233.1| unknown; predicted
           coding region [Mycoplasma pulmonis]
          Length = 306

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = -3

Query: 179 HYNEAFSLPFELFCFISFWILPILFIFSFAM 87
           H+   FS+ FE+F  I F+IL +  I SF +
Sbjct: 218 HFKNQFSISFEIFIIICFFILLLHIISSFIL 248



>emb|CAC81793.1| transposase-like protein B [Clostridium difficile]
          Length = 361

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 19/49 (38%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
 Frame = +1

Query: 40  FCVSST--HINNPCFTTIMAKEKMNKIGKIQKEMKQKS--SKGRENASL 174
           FC+SS    I NP +     KE +NK+ K+Q+E+ +K+  S  R  A L
Sbjct: 180 FCISSCGEFIENPKYL----KESLNKLAKLQRELSRKTIGSLNRNKARL 224



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 43
effective length of database: 371,609,563
effective search space used: 8918629512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)