BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47618.f
(298 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568203.1| Expressed protein; protein id: At5g08670.1... 149 1e-35
emb|CAC81058.1| mitochondrial F1 ATP synthase beta subunit ... 149 1e-35
gb|AAN31935.1| unknown protein [Arabidopsis thaliana] 149 1e-35
ref|NP_680155.1| similar to H+-transporting ATP synthase be... 149 1e-35
ref|NP_568204.1| Expressed protein; protein id: At5g08690.1... 149 1e-35
>ref|NP_568203.1| Expressed protein; protein id: At5g08670.1, supported by cDNA:
gi_15809908, supported by cDNA: gi_19347813 [Arabidopsis
thaliana]|gi|26391487|sp|P83483|AT21_ARATH ATP synthase
beta chain 1, mitochondrial
precursor|gi|13548325|emb|CAC35872.1| H+-transporting
ATP synthase beta chain (mitochondrial)-like protein
[Arabidopsis thaliana]|gi|15809909|gb|AAL06882.1|
At5g08670 [Arabidopsis
thaliana]|gi|19347814|gb|AAL86357.1| unknown protein
[Arabidopsis thaliana]|gi|21360569|gb|AAM47481.1|
At5g08670/At5g08670 [Arabidopsis
thaliana]|gi|21436349|gb|AAM51344.1| unknown protein
[Arabidopsis thaliana]|gi|26452103|dbj|BAC43141.1|
putative H+-transporting ATP synthase beta chain
(mitochondrial) [Arabidopsis thaliana]
Length = 556
Score = 149 bits (375), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1
Query: 298 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 119
MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL
Sbjct: 470 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 529
Query: 118 SEQSFYMVGGIDE 80
SEQSFYMVGGIDE
Sbjct: 530 SEQSFYMVGGIDE 542
>emb|CAC81058.1| mitochondrial F1 ATP synthase beta subunit [Arabidopsis thaliana]
Length = 589
Score = 149 bits (375), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1
Query: 298 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 119
MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL
Sbjct: 503 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 562
Query: 118 SEQSFYMVGGIDE 80
SEQSFYMVGGIDE
Sbjct: 563 SEQSFYMVGGIDE 575
>gb|AAN31935.1| unknown protein [Arabidopsis thaliana]
Length = 446
Score = 149 bits (375), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1
Query: 298 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 119
MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL
Sbjct: 360 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 419
Query: 118 SEQSFYMVGGIDE 80
SEQSFYMVGGIDE
Sbjct: 420 SEQSFYMVGGIDE 432
>ref|NP_680155.1| similar to H+-transporting ATP synthase beta chain; protein id:
At5g08680.1 [Arabidopsis
thaliana]|gi|13548326|emb|CAC35873.1| H+-transporting
ATP synthase beta chain (mitochondrial)-like protein
[Arabidopsis thaliana]|gi|26450906|dbj|BAC42560.1|
putative H+-transporting ATP synthase beta chain
(mitochondrial) [Arabidopsis thaliana]
Length = 559
Score = 149 bits (375), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1
Query: 298 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 119
MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL
Sbjct: 473 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 532
Query: 118 SEQSFYMVGGIDE 80
SEQSFYMVGGIDE
Sbjct: 533 SEQSFYMVGGIDE 545
>ref|NP_568204.1| Expressed protein; protein id: At5g08690.1, supported by cDNA:
gi_15293122, supported by cDNA: gi_19310682, supported
by cDNA: gi_21281108 [Arabidopsis
thaliana]|gi|26391492|sp|P83484|AT22_ARATH ATP synthase
beta chain 2, mitochondrial
precursor|gi|13548327|emb|CAC35874.1| H+-transporting
ATP synthase beta chain (mitochondrial)-like protein
[Arabidopsis thaliana]|gi|15293123|gb|AAK93672.1|
unknown protein [Arabidopsis
thaliana]|gi|19310683|gb|AAL85072.1| unknown protein
[Arabidopsis thaliana]|gi|21281109|gb|AAM44896.1|
unknown protein [Arabidopsis
thaliana]|gi|26452188|dbj|BAC43182.1| putative
H+-transporting ATP synthase beta chain (mitochondrial)
[Arabidopsis thaliana]
Length = 556
Score = 149 bits (375), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1
Query: 298 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 119
MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL
Sbjct: 470 MDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDL 529
Query: 118 SEQSFYMVGGIDE 80
SEQSFYMVGGIDE
Sbjct: 530 SEQSFYMVGGIDE 542
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 74
effective length of database: 330,099,137
effective search space used: 7922379288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)