BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47604.f
(261 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189984.1| ribosomal S29 -like protein; protein id: A... 91 3e-18
ref|NP_001023.1| ribosomal protein S29; 40S ribosomal prote... 70 6e-12
sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29|gi|15294075|... 70 7e-12
gb|AAF78063.1|AF266749_1 ribsomal protein S29 [Culex pipien... 67 6e-11
gb|EAA01351.1| agCP12540 [Anopheles gambiae str. PEST] 67 6e-11
>ref|NP_189984.1| ribosomal S29 -like protein; protein id: At3g43980.1, supported by
cDNA: 473., supported by cDNA: gi_13194825, supported by
cDNA: gi_13605739 [Arabidopsis
thaliana]|gi|15229844|ref|NP_189987.1| ribosomal protein
S29 - like; protein id: At3g44010.1 [Arabidopsis
thaliana]|gi|18418310|ref|NP_567938.1| Expressed
protein; protein id: At4g33865.1, supported by cDNA:
24629., supported by cDNA: gi_13358220 [Arabidopsis
thaliana]|gi|11276612|pir||T48952 ribosomal S29-like
protein - Arabidopsis
thaliana|gi|7594559|emb|CAB88126.1| ribosomal S29-like
protein [Arabidopsis
thaliana]|gi|7594562|emb|CAB88129.1| ribosomal protein
S29-like [Arabidopsis
thaliana]|gi|11692886|gb|AAG40046.1|AF324695_1 AT3g43980
[Arabidopsis
thaliana]|gi|11762210|gb|AAG40383.1|AF325031_1 AT3g43980
[Arabidopsis
thaliana]|gi|11908082|gb|AAG41470.1|AF326888_1 putative
ribosomal S29 protein [Arabidopsis
thaliana]|gi|13194826|gb|AAK15575.1|AF349528_1 putative
ribosomal S29 protein [Arabidopsis
thaliana]|gi|13605740|gb|AAK32863.1|AF361851_1
AT3g43980/T15B3_120 [Arabidopsis
thaliana]|gi|21555262|gb|AAM63818.1| ribosomal protein
S29-like [Arabidopsis
thaliana]|gi|21592488|gb|AAM64438.1| ribosomal protein
S29-like protein [Arabidopsis
thaliana]|gi|21593818|gb|AAM65785.1| ribosomal protein
S29-like [Arabidopsis
thaliana]|gi|22136560|gb|AAM91066.1| AT3g43980/T15B3_120
[Arabidopsis thaliana]|gi|26452256|dbj|BAC43215.1|
putative ribosomal S29 subunit [Arabidopsis
thaliana]|gi|27754282|gb|AAO22594.1| putative ribosomal
protein S29 [Arabidopsis
thaliana]|gi|28393861|gb|AAO42338.1| putative ribosomal
protein S29 [Arabidopsis thaliana]
Length = 56
Score = 91.3 bits (225), Expect = 3e-18
Identities = 39/40 (97%), Positives = 40/40 (99%)
Frame = -3
Query: 241 GSRLCRVCGNSHGLVRKYGLNCCRQCFRSNAKEIGFIKYR 122
GSRLCRVCGNSHGL+RKYGLNCCRQCFRSNAKEIGFIKYR
Sbjct: 17 GSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56
>ref|NP_001023.1| ribosomal protein S29; 40S ribosomal protein S29 [Homo
sapiens]|gi|6677803|ref|NP_033119.1| ribosomal protein
S29; S29 ribosomal protein [Mus
musculus]|gi|6981490|ref|NP_037008.1| ribosomal protein
S29 [Rattus norvegicus]|gi|27807381|ref|NP_777229.1|
ribosomal protein S29 [Bos
taurus]|gi|266972|sp|P30054|RS29_HUMAN 40S ribosomal
protein S29|gi|631884|pir||S30298 ribosomal protein S29,
cytosolic [validated] - rat|gi|1362934|pir||S55919
ribosomal protein S29, cytosolic -
human|gi|7440409|pir||S71578 ribosomal protein S29 -
mouse|gi|57133|emb|CAA41778.1| ribosomal protein S29
[Rattus norvegicus]|gi|550027|gb|AAA85661.1| ribosomal
protein S29|gi|1220361|gb|AAB27426.1| homologous to
antisense sequence of krev-1, anti
oncogene|gi|1220418|gb|AAB27429.1| S29 ribosomal
protein|gi|1513230|gb|AAB06757.1| ribosomal protein S29
[Bos taurus]|gi|12833290|dbj|BAB22469.1| unnamed protein
product [Mus musculus]|gi|12848933|dbj|BAB28143.1|
unnamed protein product [Mus
musculus]|gi|17932988|dbj|BAB79485.1| ribosomal protein
S29 [Homo sapiens]|gi|21595714|gb|AAH32813.1| ribosomal
protein S29 [Homo sapiens]|gi|22267962|gb|AAH35313.1|
ribosomal protein S29 [Homo
sapiens]|gi|1096945|prf||2113200H ribosomal protein S29
Length = 56
Score = 70.5 bits (171), Expect = 6e-12
Identities = 30/38 (78%), Positives = 32/38 (83%)
Frame = -3
Query: 241 GSRLCRVCGNSHGLVRKYGLNCCRQCFRSNAKEIGFIK 128
GSR CRVC N HGL+RKYGLN CRQCFR AK+IGFIK
Sbjct: 17 GSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29|gi|15294075|gb|AAK95214.1|AF402840_1 40S
ribosomal protein S29 [Ictalurus punctatus]
Length = 56
Score = 70.1 bits (170), Expect = 7e-12
Identities = 29/38 (76%), Positives = 32/38 (83%)
Frame = -3
Query: 241 GSRLCRVCGNSHGLVRKYGLNCCRQCFRSNAKEIGFIK 128
GSR CRVC N HGL+RKYGLN CRQCFR AK+IGF+K
Sbjct: 17 GSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54
>gb|AAF78063.1|AF266749_1 ribsomal protein S29 [Culex pipiens quinquefasciatus]
Length = 56
Score = 67.0 bits (162), Expect = 6e-11
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -3
Query: 241 GSRLCRVCGNSHGLVRKYGLNCCRQCFRSNAKEIGFIK 128
GSR CR C N+HG++RKYGLN CRQCFR AK+IGF K
Sbjct: 17 GSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54
>gb|EAA01351.1| agCP12540 [Anopheles gambiae str. PEST]
Length = 79
Score = 67.0 bits (162), Expect = 6e-11
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -3
Query: 241 GSRLCRVCGNSHGLVRKYGLNCCRQCFRSNAKEIGFIK 128
GSR CR C N+HG++RKYGLN CRQCFR AK+IGF K
Sbjct: 40 GSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 77
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 62
effective length of database: 346,167,689
effective search space used: 8308024536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)