BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47584.f
(395 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188173.1| early auxin-induced protein, IAA19; protei... 221 2e-58
gb|AAM67069.1| early auxin-induced protein IAA19 [Arabidops... 220 4e-58
gb|AAB84356.1| IAA19 [Arabidopsis thaliana] 161 2e-39
sp|P32293|AX2A_PHAAU Auxin-induced protein 22A (Indole-3-ac... 100 1e-21
sp|P13088|AX22_SOYBN AUXIN-INDUCED PROTEIN AUX22|gi|81758|p... 97 1e-20
>ref|NP_188173.1| early auxin-induced protein, IAA19; protein id: At3g15540.1,
supported by cDNA: 94231. [Arabidopsis
thaliana]|gi|17365900|sp|O24409|AXIJ_ARATH
Auxin-responsive protein IAA19 (Indoleacetic
acid-induced protein 19)|gi|7021739|gb|AAF35420.1| early
auxin-induced protein, IAA19 [Arabidopsis
thaliana]|gi|15795119|dbj|BAB02383.1| auxin-regulated
protein, IAA19 [Arabidopsis thaliana]
Length = 197
Score = 221 bits (564), Expect(2) = 2e-58
Identities = 108/116 (93%), Positives = 110/116 (94%)
Frame = -2
Query: 355 GFPGRDVSEKMM*KRPFPEMNMTSSGSNSDQCESGVXSSGGDAEKVNDSPAAKNQVVGWP 176
G PGRDV+EKMM KR F EMNMTSSGSNSDQCESGV SSGGDAEKVNDSPAAK+QVVGWP
Sbjct: 16 GLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEKVNDSPAAKSQVVGWP 75
Query: 175 PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSXQGYDDLAFALDKLF 8
PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGS QGYDDLAFALDKLF
Sbjct: 76 PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLF 131
Score = 24.6 bits (52), Expect(2) = 2e-58
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1
Query: 383 GLR*TELRLGLPG 345
GL TELRLGLPG
Sbjct: 7 GLEITELRLGLPG 19
>gb|AAM67069.1| early auxin-induced protein IAA19 [Arabidopsis thaliana]
Length = 197
Score = 220 bits (561), Expect(2) = 4e-58
Identities = 107/116 (92%), Positives = 110/116 (94%)
Frame = -2
Query: 355 GFPGRDVSEKMM*KRPFPEMNMTSSGSNSDQCESGVXSSGGDAEKVNDSPAAKNQVVGWP 176
G PGRDV+EKMM KR F EMNMTSSGSNSDQCESGV SSGGDAEKVNDSPAAK+QVVGWP
Sbjct: 16 GLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEKVNDSPAAKSQVVGWP 75
Query: 175 PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSXQGYDDLAFALDKLF 8
PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGS QGYDDLAF+LDKLF
Sbjct: 76 PVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFSLDKLF 131
Score = 24.6 bits (52), Expect(2) = 4e-58
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1
Query: 383 GLR*TELRLGLPG 345
GL TELRLGLPG
Sbjct: 7 GLEITELRLGLPG 19
>gb|AAB84356.1| IAA19 [Arabidopsis thaliana]
Length = 145
Score = 161 bits (407), Expect = 2e-39
Identities = 77/79 (97%), Positives = 78/79 (98%)
Frame = -2
Query: 244 SSGGDAEKVNDSPAAKNQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKM 65
SSGGDAEKVNDSPAAK+QVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKM
Sbjct: 1 SSGGDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKM 60
Query: 64 DLGSXQGYDDLAFALDKLF 8
DLGS QGYDDLAFALDKLF
Sbjct: 61 DLGSSQGYDDLAFALDKLF 79
>sp|P32293|AX2A_PHAAU Auxin-induced protein 22A (Indole-3-acetic acid induced protein
ARG3)|gi|7442241|pir||T10939 auxin-induced protein aux22
- mung bean|gi|287566|dbj|BAA03308.1| ORF [Vigna
radiata]
Length = 194
Score = 100 bits (250), Expect(2) = 1e-21
Identities = 53/84 (63%), Positives = 58/84 (68%)
Frame = -2
Query: 259 ESGVXSSGGDAEKVNDSPAAKNQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVP 80
E+ GGD + N KNQVVGWPPVCSYRKKNS EAS YVKVSMDG P
Sbjct: 47 ENSSSGGGGDRKMEN-----KNQVVGWPPVCSYRKKNSVNEASKM-----YVKVSMDGAP 96
Query: 79 YLRKMDLGSXQGYDDLAFALDKLF 8
+LRKMDLG +GY DLAFAL+KLF
Sbjct: 97 FLRKMDLGMHKGYSDLAFALEKLF 120
Score = 22.3 bits (46), Expect(2) = 1e-21
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 383 GLR*TELRLGLP 348
GL TELRLGLP
Sbjct: 7 GLEITELRLGLP 18
>sp|P13088|AX22_SOYBN AUXIN-INDUCED PROTEIN AUX22|gi|81758|pir||B28993 auxin-induced
protein aux22 - soybean|gi|169919|gb|AAA33944.1|
auxin-regulated protein (Aux22)
Length = 195
Score = 97.1 bits (240), Expect(2) = 1e-20
Identities = 57/110 (51%), Positives = 69/110 (61%)
Frame = -2
Query: 337 VSEKMM*KRPFPEMNMTSSGSNSDQCESGVXSSGGDAEKVNDSPAAKNQVVGWPPVCSYR 158
V++K KR F E++ NS SSGG K+ + K+QVVGWPPVCSYR
Sbjct: 27 VNKKNEKKRAFSEIDDGVGDENS--------SSGGGDRKMETN---KSQVVGWPPVCSYR 75
Query: 157 KKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSXQGYDDLAFALDKLF 8
KKNS E ++ YVKVSMDG P+LRK+DLG +GY DLA ALDKLF
Sbjct: 76 KKNSMNEGASKM----YVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLF 121
Score = 22.3 bits (46), Expect(2) = 1e-20
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 383 GLR*TELRLGLP 348
GL TELRLGLP
Sbjct: 7 GLEITELRLGLP 18
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.316 0.128 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 107
effective length of database: 285,910,619
effective search space used: 6861854856
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)