BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47581.f
(311 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JQ2244 ribosomal protein L10.e, cytosolic - Arabidopsi... 64 1e-10
pir||E86277 hypothetical protein F14L17.9 - Arabidopsis tha... 64 1e-10
ref|NP_563945.1| tumor suppressor, putative; protein id: At... 64 1e-10
ref|NP_174013.1| putative 60s ribosomal protein L10; protei... 64 2e-10
ref|NP_564878.1| 60S ribosomal protein L10, putative; prote... 60 7e-09
>pir||JQ2244 ribosomal protein L10.e, cytosolic - Arabidopsis
thaliana|gi|17682|emb|CAA78856.1| Wilm's tumor
suppressor homologue [Arabidopsis thaliana]
Length = 220
Score = 64.3 bits (155), Expect(2) = 1e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 1e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 203 HGPLANRQPGSAFLPAHY 220
>pir||E86277 hypothetical protein F14L17.9 - Arabidopsis
thaliana|gi|7262674|gb|AAF43932.1|AC012188_9 Strong
similarity, practically identical, to a 60S Ribosomal
Protein L10 (Wilm's Tumor Suppressor Protein Homolog)
from Arabidopsis thaliana gi|1172806, and contains a
Ribosomal L10 PF|00826 domain. ESTs gb|Z18472,
gb|T76209, gb|N65098, gb|T43013, gb|T46279, gb|AA394948,
gb|AA713166, gb|T44895, gb|AA042691 come from this
gene|gi|15028019|gb|AAK76540.1| putative tumor
suppressor protein [Arabidopsis
thaliana]|gi|16226263|gb|AAL16118.1|AF428286_1
At1g14320/F14L17_28 [Arabidopsis
thaliana]|gi|16226713|gb|AAL16239.1|AF428470_1
At1g14320/F14L17_28 [Arabidopsis
thaliana]|gi|21281241|gb|AAM45037.1| putative tumor
suppressor protein [Arabidopsis
thaliana]|gi|23397080|gb|AAN31825.1| putative tumor
suppressor [Arabidopsis thaliana]
Length = 220
Score = 64.3 bits (155), Expect(2) = 1e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 1e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 203 HGPLANRQPGSAFLPAHY 220
>ref|NP_563945.1| tumor suppressor, putative; protein id: At1g14320.1, supported by
cDNA: gi_14190448, supported by cDNA: gi_15215902
[Arabidopsis
thaliana]|gi|14190449|gb|AAK55705.1|AF378902_1
At1g14320/F14L17_28 [Arabidopsis
thaliana]|gi|15215903|gb|AAK91495.1| At1g14320/F14L17_28
[Arabidopsis thaliana]
Length = 119
Score = 64.3 bits (155), Expect(2) = 1e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 41 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 100
Query: 181 C 183
C
Sbjct: 101 C 101
Score = 21.6 bits (44), Expect(2) = 1e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 102 HGPLANRQPGSAFLPAHY 119
>ref|NP_174013.1| putative 60s ribosomal protein L10; protein id: At1g26910.1,
supported by cDNA: 33391. [Arabidopsis
thaliana]|gi|19884272|sp|Q08770|RL10_ARATH 60S ribosomal
protein L10 (Wilm's tumor suppressor protein
homolog)|gi|25313180|pir||A86396 60s ribosomal protein
L10 [imported] - Arabidopsis
thaliana|gi|4262180|gb|AAD14497.1|
29621|gi|21592869|gb|AAM64819.1| putative 60s ribosomal
protein L10 [Arabidopsis thaliana]
Length = 221
Score = 63.5 bits (153), Expect(2) = 2e-10
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKR+VPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 2e-10
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 HGLWLTRKPGSAFCS 227
HG R+PGSAF S
Sbjct: 203 HGPLANRQPGSAFLS 217
>ref|NP_564878.1| 60S ribosomal protein L10, putative; protein id: At1g66580.1,
supported by cDNA: 35307., supported by cDNA:
gi_14194140 [Arabidopsis
thaliana]|gi|14194141|gb|AAK56265.1|AF367276_1
At1g66580/T12I7_3 [Arabidopsis
thaliana]|gi|15777885|gb|AAL05903.1| At1g66580/T12I7_3
[Arabidopsis thaliana]|gi|21593025|gb|AAM64974.1| 60S
ribosomal protein L10, putative [Arabidopsis thaliana]
Length = 221
Score = 60.1 bits (144), Expect = 7e-09
Identities = 33/58 (56%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
Frame = +2
Query: 56 PGRQKIIVSRKWGFTKFNRADFTKL--SKRXXXXXXXXXXXXXHAWPLANPQAGKCFL 223
PGRQKIIVSRKWGFTKFNRA++TKL KR H PLAN Q G F+
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHG-PLANRQPGSAFI 216
Score = 50.8 bits (120), Expect(2) = 1e-06
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HG H QEAL RAKFK P K ++ G + ++ ++ KR+VPDGVN K LS
Sbjct: 142 DNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLS 201
Score = 21.6 bits (44), Expect(2) = 1e-06
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 HGLWLTRKPGSAFCS 227
HG R+PGSAF S
Sbjct: 203 HGPLANRQPGSAFIS 217
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 79
effective length of database: 323,403,907
effective search space used: 7761693768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)