BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47575.f
         (317 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_192193.1|  small nuclear riboprotein Sm-D1-like prote...    83   1e-15
ref|NP_187416.1|  putative small nuclear ribonucleoprotein (...    75   2e-13
gb|EAA04383.1|  ebiP9562 [Anopheles gambiae str. PEST]             53   1e-06
gb|EAA03982.1|  agCP3535 [Anopheles gambiae str. PEST]             53   1e-06
ref|NP_524774.1|  small nuclear ribonucleoprotein at 69D [Dr...    52   1e-06

>ref|NP_192193.1| small nuclear riboprotein Sm-D1-like protein; protein id:
           At4g02840.1, supported by cDNA: 11560. [Arabidopsis
           thaliana]|gi|25347713|pir||B85036 small nuclear
           riboprotein Sm-D1-like protein [imported] - Arabidopsis
           thaliana|gi|4263519|gb|AAD15345.1| small nuclear
           riboprotein Sm-D1 [Arabidopsis
           thaliana]|gi|7269769|emb|CAB77769.1| small nuclear
           riboprotein Sm-D1-like protein [Arabidopsis
           thaliana]|gi|21536940|gb|AAM61281.1| small nuclear
           riboprotein Sm-D1-like protein [Arabidopsis
           thaliana]|gi|26450421|dbj|BAC42325.1| putative small
           nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
          Length = 116

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 38/49 (77%), Positives = 43/49 (87%)
 Frame = -3

Query: 315 ENPVTLDHLSVXGGNXRYYNLPDSMNLETMLVEETPRNKPTQPTAGKIP 169
           +NPVTLDHLSV G N RYY LPDS+NLET+LVE+TPR KP +PTAGKIP
Sbjct: 50  KNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIP 98



>ref|NP_187416.1| putative small nuclear ribonucleoprotein (Sm-D1); protein id:
           At3g07590.1, supported by cDNA: 3671., supported by
           cDNA: gi_17978994 [Arabidopsis
           thaliana]|gi|6466942|gb|AAF13077.1|AC009176_4 putative
           small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis
           thaliana]|gi|17978995|gb|AAL47458.1| AT3g07590/MLP3_4
           [Arabidopsis thaliana]|gi|21593161|gb|AAM65110.1|
           putative small nuclear ribonucleoprotein Sm-D1
           [Arabidopsis thaliana]|gi|21700847|gb|AAM70547.1|
           AT3g07590/MLP3_4 [Arabidopsis thaliana]
          Length = 114

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 34/47 (72%), Positives = 40/47 (84%)
 Frame = -3

Query: 315 ENPVTLDHLSVXGGNXRYYNLPDSMNLETMLVEETPRNKPTQPTAGK 175
           +NPVTLDHLS+ G N RYY LPDS+NLET+LVE+TPR KP +P AGK
Sbjct: 50  KNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGK 96



>gb|EAA04383.1| ebiP9562 [Anopheles gambiae str. PEST]
          Length = 122

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 34/49 (68%)
 Frame = -3

Query: 312 NPVTLDHLSVXGGNXRYYNLPDSMNLETMLVEETPRNKPTQPTAGKIPP 166
           +PVTLD LS+ G N RYY LPDS+ LET+L+++ P+ +  +  A +  P
Sbjct: 47  DPVTLDSLSIRGNNIRYYILPDSLPLETLLIDDAPKTRAKKREANRGGP 95



>gb|EAA03982.1| agCP3535 [Anopheles gambiae str. PEST]
          Length = 130

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 34/49 (68%)
 Frame = -3

Query: 312 NPVTLDHLSVXGGNXRYYNLPDSMNLETMLVEETPRNKPTQPTAGKIPP 166
           +PVTLD LS+ G N RYY LPDS+ LET+L+++ P+ +  +  A +  P
Sbjct: 55  DPVTLDSLSIRGNNIRYYILPDSLPLETLLIDDAPKTRAKKREANRGGP 103



>ref|NP_524774.1| small nuclear ribonucleoprotein at 69D [Drosophila
           melanogaster]|gi|7294552|gb|AAF49893.1| CG10753-PA
           [Drosophila melanogaster]
          Length = 124

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 36/47 (75%)
 Frame = -3

Query: 312 NPVTLDHLSVXGGNXRYYNLPDSMNLETMLVEETPRNKPTQPTAGKI 172
           +PV L+ LS+ G N RY+ LPDS+ LET+L+++TP++K  +  +G++
Sbjct: 51  DPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGRV 97



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 81
effective length of database: 320,725,815
effective search space used: 7697419560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)