BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z46821.r
(299 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02011 probable cathepsin B-like cysteine proteinase (... 174 3e-43
ref|NP_567215.1| cathepsin B-like cysteine protease, putati... 174 3e-43
ref|NP_563648.1| Expressed protein; protein id: At1g02305.1... 154 3e-37
gb|AAF04727.1|AF101239_1 cathepsin B-like cysteine proteina... 143 5e-34
gb|AAK69541.1|AF283476_1 cathepsin B-like cysteine proteina... 143 5e-34
>pir||T02011 probable cathepsin B-like cysteine proteinase (EC 3.4.22.-)
T15B16.17a - Arabidopsis
thaliana|gi|3859606|gb|AAC72872.1| contains similarity
to cysteine proteases (Pfam: PF00112, E=1.3e-79, N=1)
[Arabidopsis thaliana]|gi|7268205|emb|CAB77732.1|
cathepsin B-like cysteine protease [Arabidopsis
thaliana]
Length = 359
Score = 174 bits (440), Expect = 3e-43
Identities = 82/97 (84%), Positives = 83/97 (85%)
Frame = +3
Query: 9 GAVESLSDRFCIQFGMNISLSVNDLLAXXXXXXXXXXXXXYPIAAWQYFSYSGVVTEECD 188
GAVESLSDRFCIQFGMNISLSVNDLLA YPIAAWQYFSYSGVVTEECD
Sbjct: 135 GAVESLSDRFCIQFGMNISLSVNDLLACCGFRCGDGCDGGYPIAAWQYFSYSGVVTEECD 194
Query: 189 PYFDNTGCSHPGCEPAYPTXKCSRKCVSDNKLWSESE 299
PYFDNTGCSHPGCEPAYPT KCSRKCVSDNKLWSES+
Sbjct: 195 PYFDNTGCSHPGCEPAYPTPKCSRKCVSDNKLWSESK 231
>ref|NP_567215.1| cathepsin B-like cysteine protease, putative; protein id:
At4g01610.1, supported by cDNA: 20761., supported by
cDNA: gi_13877860, supported by cDNA: gi_17473833,
supported by cDNA: gi_21281112 [Arabidopsis
thaliana]|gi|13877861|gb|AAK44008.1|AF370193_1 putative
cathepsin B cysteine protease [Arabidopsis
thaliana]|gi|17473834|gb|AAL38343.1| unknown protein
[Arabidopsis thaliana]|gi|21281113|gb|AAM45063.1|
putative cathepsin B cysteine protease [Arabidopsis
thaliana]|gi|21554165|gb|AAM63244.1| cathepsin B-like
cysteine protease, putative [Arabidopsis
thaliana]|gi|24417490|gb|AAN60355.1| unknown
[Arabidopsis thaliana]|gi|24899725|gb|AAN65077.1|
unknown protein [Arabidopsis thaliana]
Length = 359
Score = 174 bits (440), Expect = 3e-43
Identities = 82/97 (84%), Positives = 83/97 (85%)
Frame = +3
Query: 9 GAVESLSDRFCIQFGMNISLSVNDLLAXXXXXXXXXXXXXYPIAAWQYFSYSGVVTEECD 188
GAVESLSDRFCIQFGMNISLSVNDLLA YPIAAWQYFSYSGVVTEECD
Sbjct: 135 GAVESLSDRFCIQFGMNISLSVNDLLACCGFRCGDGCDGGYPIAAWQYFSYSGVVTEECD 194
Query: 189 PYFDNTGCSHPGCEPAYPTXKCSRKCVSDNKLWSESE 299
PYFDNTGCSHPGCEPAYPT KCSRKCVSDNKLWSES+
Sbjct: 195 PYFDNTGCSHPGCEPAYPTPKCSRKCVSDNKLWSESK 231
>ref|NP_563648.1| Expressed protein; protein id: At1g02305.1, supported by cDNA:
gi_14532525, supported by cDNA: gi_16226807 [Arabidopsis
thaliana]|gi|14532526|gb|AAK63991.1| At1g02300/T6A9_10
[Arabidopsis
thaliana]|gi|16226808|gb|AAL16267.1|AF428337_1
At1g02300/T6A9_10 [Arabidopsis
thaliana]|gi|25090140|gb|AAN72238.1| At1g02300/T6A9_10
[Arabidopsis thaliana]
Length = 362
Score = 154 bits (389), Expect = 3e-37
Identities = 70/97 (72%), Positives = 78/97 (80%)
Frame = +3
Query: 9 GAVESLSDRFCIQFGMNISLSVNDLLAXXXXXXXXXXXXXYPIAAWQYFSYSGVVTEECD 188
GAVESLSDRFCI++ MN+SLSVNDLLA YPIAAW+YF + GVVTEECD
Sbjct: 138 GAVESLSDRFCIKYNMNVSLSVNDLLACCGFLCGQGCNGGYPIAAWRYFKHHGVVTEECD 197
Query: 189 PYFDNTGCSHPGCEPAYPTXKCSRKCVSDNKLWSESE 299
PYFDNTGCSHPGCEPAYPT KC+RKCVS N+LW ES+
Sbjct: 198 PYFDNTGCSHPGCEPAYPTPKCARKCVSGNQLWRESK 234
>gb|AAF04727.1|AF101239_1 cathepsin B-like cysteine proteinase [Ipomoea batatas]
Length = 352
Score = 143 bits (361), Expect = 5e-34
Identities = 65/97 (67%), Positives = 72/97 (74%)
Frame = +3
Query: 9 GAVESLSDRFCIQFGMNISLSVNDLLAXXXXXXXXXXXXXYPIAAWQYFSYSGVVTEECD 188
GAVESL+DRFCI +G N++LSVNDLLA YPIAAWQYF +GVVT ECD
Sbjct: 128 GAVESLTDRFCIHYGTNVTLSVNDLLACCGFLCGEGCDGGYPIAAWQYFKRTGVVTSECD 187
Query: 189 PYFDNTGCSHPGCEPAYPTXKCSRKCVSDNKLWSESE 299
PYFD TGCSHPGCEPAYPT C +KCV N LWSES+
Sbjct: 188 PYFDQTGCSHPGCEPAYPTPACEKKCVKKNLLWSESK 224
>gb|AAK69541.1|AF283476_1 cathepsin B-like cysteine proteinase [Ipomoea batatas]
Length = 352
Score = 143 bits (361), Expect = 5e-34
Identities = 65/97 (67%), Positives = 72/97 (74%)
Frame = +3
Query: 9 GAVESLSDRFCIQFGMNISLSVNDLLAXXXXXXXXXXXXXYPIAAWQYFSYSGVVTEECD 188
GAVESL+DRFCI +G N++LSVNDLLA YPIAAWQYF +GVVT ECD
Sbjct: 128 GAVESLTDRFCIHYGTNVTLSVNDLLACCGFLCGEGCDGGYPIAAWQYFKRTGVVTSECD 187
Query: 189 PYFDNTGCSHPGCEPAYPTXKCSRKCVSDNKLWSESE 299
PYFD TGCSHPGCEPAYPT C +KCV N LWSES+
Sbjct: 188 PYFDQTGCSHPGCEPAYPTPACEKKCVKKNLLWSESK 224
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 75
effective length of database: 328,760,091
effective search space used: 7890242184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)