BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z46687.r
         (296 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_174120.1|  unknown protein; protein id: At1g27990.1 [...   154   2e-37
dbj|BAC41815.1|  unknown protein [Arabidopsis thaliana]           154   2e-37
ref|NP_568771.1|  expressed protein; protein id: At5g52420.1...    44   5e-04
gb|AAK83611.1|  AT5g52420/K24M7_17 [Arabidopsis thaliana]|gi...    44   5e-04
gb|ZP_00081215.1|  hypothetical protein [Geobacter metallire...    34   0.43 

>ref|NP_174120.1| unknown protein; protein id: At1g27990.1 [Arabidopsis
           thaliana]|gi|25403048|pir||D86405 unknown protein
           [imported] - Arabidopsis
           thaliana|gi|12322980|gb|AAG51470.1|AC069471_1 unknown
           protein [Arabidopsis thaliana]
          Length = 271

 Score =  154 bits (390), Expect = 2e-37
 Identities = 81/86 (94%), Positives = 82/86 (95%)
 Frame = +3

Query: 3   TDVDKTASSSEKGRWSVMTAIGGGSGGLMVSLRVIELQLVAFILVFSASGLVPILDMLFP 182
           TDVDKTASSSEKGRWS MTAIGGGSGGLM SLRVIELQLVAFILVFSASGLVPILDMLFP
Sbjct: 12  TDVDKTASSSEKGRWSGMTAIGGGSGGLMGSLRVIELQLVAFILVFSASGLVPILDMLFP 71

Query: 183 AFASIYIIALSRLAFPSHGVSTLPPK 260
           AFASIYIIALSRLAFPSHGVST  P+
Sbjct: 72  AFASIYIIALSRLAFPSHGVSTASPE 97




 Score = 37.4 bits (85), Expect = 0.050
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +2

Query: 173 AFSSVCVYLYNRPLAFSFPFSRCFHASPEVFRGSKLFKLFV 295
           AF+S+ +   +R    +FP      ASPEVFRGSKLF+L+V
Sbjct: 72  AFASIYIIALSR---LAFPSHGVSTASPEVFRGSKLFRLYV 109



>dbj|BAC41815.1| unknown protein [Arabidopsis thaliana]
          Length = 119

 Score =  154 bits (390), Expect = 2e-37
 Identities = 81/86 (94%), Positives = 82/86 (95%)
 Frame = +3

Query: 3   TDVDKTASSSEKGRWSVMTAIGGGSGGLMVSLRVIELQLVAFILVFSASGLVPILDMLFP 182
           TDVDKTASSSEKGRWS MTAIGGGSGGLM SLRVIELQLVAFILVFSASGLVPILDMLFP
Sbjct: 12  TDVDKTASSSEKGRWSGMTAIGGGSGGLMGSLRVIELQLVAFILVFSASGLVPILDMLFP 71

Query: 183 AFASIYIIALSRLAFPSHGVSTLPPK 260
           AFASIYIIALSRLAFPSHGVST  P+
Sbjct: 72  AFASIYIIALSRLAFPSHGVSTASPE 97




 Score = 33.1 bits (74), Expect = 0.95
 Identities = 18/38 (47%), Positives = 24/38 (62%)
 Frame = +2

Query: 173 AFSSVCVYLYNRPLAFSFPFSRCFHASPEVFRGSKLFK 286
           AF+S+ +   +R    +FP      ASPEVFRGSKLF+
Sbjct: 72  AFASIYIIALSR---LAFPSHGVSTASPEVFRGSKLFR 106



>ref|NP_568771.1| expressed protein; protein id: At5g52420.1, supported by cDNA:
           gi_15146255, supported by cDNA: gi_19699159 [Arabidopsis
           thaliana]|gi|10177408|dbj|BAB10539.1|
           gene_id:K24M7.17~unknown protein [Arabidopsis thaliana]
          Length = 242

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 21/43 (48%), Positives = 27/43 (61%)
 Frame = +3

Query: 108 ELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSH 236
           +L ++A I+V SASGLV I D +F     IY   LS+L FP H
Sbjct: 44  QLNILAIIIVLSASGLVTIQDFIFTILTLIYFFFLSKLIFPPH 86



>gb|AAK83611.1| AT5g52420/K24M7_17 [Arabidopsis
           thaliana]|gi|19699160|gb|AAL90946.1| AT5g52420/K24M7_17
           [Arabidopsis thaliana]
          Length = 242

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 21/43 (48%), Positives = 27/43 (61%)
 Frame = +3

Query: 108 ELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSH 236
           +L ++A I+V SASGLV I D +F     IY   LS+L FP H
Sbjct: 44  QLNILAIIIVLSASGLVTIQDFIFTILTLIYFFFLSKLIFPPH 86



>gb|ZP_00081215.1| hypothetical protein [Geobacter metallireducens]
          Length = 477

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 24/73 (32%), Positives = 39/73 (52%), Gaps = 4/73 (5%)
 Frame = +3

Query: 54  MTAIGGGSGGLMVSLRVIELQL-VAFILVFSASGLVPILDMLFPAFA---SIYIIALSRL 221
           +  IG G GG + ++R  +L + VA +   SA G V + +   P+ A   S  + AL+R 
Sbjct: 8   LIVIGAGPGGYVAAIRAAQLGMSVAVVEKRSALGGVCLNEGCIPSKALLDSSELFALARD 67

Query: 222 AFPSHGVSTLPPK 260
            F  HG++  PP+
Sbjct: 68  RFAGHGIAIDPPR 80



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 74
effective length of database: 330,099,137
effective search space used: 7922379288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)