BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z46680.f
         (304 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ZP_00096922.1|  hypothetical protein [Novosphingobium aro...   114   2e-25
sp|P42503|DCUP_RHOCA  Uroporphyrinogen decarboxylase (URO-D)...   100   4e-21
ref|NP_105348.1|  uroporphyrinogen decarboxylase [Mesorhizob...   100   4e-21
ref|NP_699041.1|  uroporphyrinogen decarboxylase [Brucella s...    99   1e-20
ref|NP_538919.1|  UROPORPHYRINOGEN DECARBOXYLASE [Brucella m...    99   1e-20

>gb|ZP_00096922.1| hypothetical protein [Novosphingobium aromaticivorans]
          Length = 320

 Score =  114 bits (286), Expect = 2e-25
 Identities = 57/95 (60%), Positives = 64/95 (67%)
 Frame = -2

Query: 285 LQAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYG 106
           L A P RL P+YETV +V A L P+TT LGFAGSPWTVATYMVAG GSRD  +TR  AY 
Sbjct: 86  LVAVPGRLSPIYETVAKVKAQLSPETTLLGFAGSPWTVATYMVAGEGSRDHHDTRALAYR 145

Query: 105 DPXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
           DP             TI+YLS Q+EAG E +QLFD
Sbjct: 146 DPSAFQAIIDAITEVTIEYLSGQVEAGAEGLQLFD 180



>sp|P42503|DCUP_RHOCA Uroporphyrinogen decarboxylase (URO-D)
           (UPD)|gi|567081|gb|AAA97435.1| uroporphyrinogen
           decarboxylase [Rhodobacter capsulatus]
          Length = 344

 Score =  100 bits (250), Expect = 4e-21
 Identities = 48/97 (49%), Positives = 62/97 (63%)
 Frame = -2

Query: 291 KGLQAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFA 112
           KG     ++L PVYET + ++  LP +TTF+GFAG PWTVATYM+AG GS+DQ    +F 
Sbjct: 109 KGKDDIHDKLAPVYETCKILSRELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKFK 168

Query: 111 YGDPXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
             D             +TI+YLSKQ+EAG E V+LFD
Sbjct: 169 DTDRAAFSALIDAVTVATIEYLSKQVEAGCEVVKLFD 205



>ref|NP_105348.1| uroporphyrinogen decarboxylase [Mesorhizobium
           loti]|gi|23814012|sp|Q98DY6|DCUP_RHILO Uroporphyrinogen
           decarboxylase (URO-D) (UPD)|gi|14024531|dbj|BAB51134.1|
           uroporphyrinogen decarboxylase [Mesorhizobium loti]
          Length = 343

 Score =  100 bits (250), Expect = 4e-21
 Identities = 48/88 (54%), Positives = 60/88 (67%)
 Frame = -2

Query: 264 LEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXXXX 85
           LEPVYETVR++ A LP +TT +GF G+PWTVATYM+AGHG+ DQ   R FAY +P     
Sbjct: 117 LEPVYETVRRLRAKLPDETTLIGFCGAPWTVATYMIAGHGTPDQAPARLFAYREPAAFQH 176

Query: 84  XXXXXATSTIDYLSKQIEAGVEAVQLFD 1
                A  +  YL +QIEAG + VQ+FD
Sbjct: 177 LLKVLADHSAAYLIRQIEAGADVVQIFD 204



>ref|NP_699041.1| uroporphyrinogen decarboxylase [Brucella suis
           1330]|gi|23348946|gb|AAN30956.1|AE014494_5
           uroporphyrinogen decarboxylase [Brucella suis 1330]
          Length = 341

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 49/94 (52%), Positives = 61/94 (64%)
 Frame = -2

Query: 282 QAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGD 103
           +   +RLEPVYETVR V   LP +TT LGF G+PWTVATYM+AGHG+ DQ   R FAY  
Sbjct: 109 EGVAKRLEPVYETVRLVREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRF 168

Query: 102 PXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
           P          A  + +YL +Q+ AG +AVQ+FD
Sbjct: 169 PEAFEKLLNDLADVSAEYLIEQLGAGADAVQIFD 202



>ref|NP_538919.1| UROPORPHYRINOGEN DECARBOXYLASE [Brucella
           melitensis]|gi|23813997|sp|Q8YJT1|DCUP_BRUME
           Uroporphyrinogen decarboxylase (URO-D)
           (UPD)|gi|25291026|pir||AD3252 uroporphyrinogen
           decarboxylase (EC 4.1.1.37) [imported] - Brucella
           melitensis (strain 16M)|gi|17981867|gb|AAL51183.1|
           UROPORPHYRINOGEN DECARBOXYLASE [Brucella melitensis]
          Length = 341

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 49/94 (52%), Positives = 61/94 (64%)
 Frame = -2

Query: 282 QAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGD 103
           +   +RLEPVYETVR V   LP +TT LGF G+PWTVATYM+AGHG+ DQ   R FAY  
Sbjct: 109 EGVAKRLEPVYETVRLVREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRF 168

Query: 102 PXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
           P          A  + +YL +Q+ AG +AVQ+FD
Sbjct: 169 PEAFEKLLNDLADVSAEYLIEQLGAGADAVQIFD 202



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 76
effective length of database: 327,421,045
effective search space used: 7858105080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)